| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997421
Identifier: 121997421
GI number: 121997421
Start: 698568
End: 699365
Strand: Reverse
Name: 121997421
Synonym: Hhal_0621
Alternate gene names: NA
Gene position: 699365-698568 (Counterclockwise)
Preceding gene: 121997422
Following gene: 121997420
Centisome position: 26.11
GC content: 71.05
Gene sequence:
>798_bases ATGCCCCGCCTCGAGCCGCGTACCCTCTACCTCAACGCCGAGCGGATCCAGGTCCGGTACGAGGGCTCGGCGCTGCGCCT GTGCCGCCCCGGCAAGGCCGCGGAGTACGTCCCGCTCGCCCGGGTTAGCCGTGCCGTCGTGCGCGGCAGCGCCGGCGAGG GGCTCCTCCAGGCTTGCCTCGCCCTGGTCGAGGCGGGTGCTGTCGTCCACTTTCAGGACGGCCACGGCCAGCCCACGGCC TGCCTGCAGCCGGCCCAGGAGCCGCAGAATCGGCCCGTCCAGGAGCTGACCTCGCTGATTGAGACACAGACCGGGCTCGT CCCCTACCACTGGTGGCGAGACGCCCAGCGCCGCCACGCCTGGAGCCTTGTCTTCCGGCGCGGTCCCCGCGGCGATTTCC AGAGCGCCTGCCGACGGCTTGAGGACTACCTGCGCAAGCTCAGCCCGCTGCGCTGGATCCCGCACGAGATCGCGGCGCTC GGCGGGGGGTTGCAAAGCTGGCTACAGGCGGAGCTGCACCGCAGCGGCTGGCGACCTGCCTGCCGCGCGCTCGCCGCCCA AGGTGAAGACCTAGAAGGCGAGCTGCGCCGTTGCCTCTATATCCCCCTGCTCTTGCGCTTCGTCCGGTGGCGACGCCATC AGCCCCCAGAGCTTACTGAGCGCCGGCGTGTCGAGTTCCTTGAGCTCCAGCTCGCGCGCCCCGTGCCCAGCCAGCTTCAT CGGCACCTGCAGGCGCTCACGGAGGAATACTACGTCAGCTGGCAGCGCATGCGCCGGGAGGAGCCCGCCCATGGGTGA
Upstream 100 bases:
>100_bases CTCCTGCCGCTGGAGCCGCGCCGCCCCCTGGTCACCCTCGGCGCTGCCGAGGTGCCCGCCGATCCAGACTTCTTCTACTT CGGCTAAGGGAGGCCCGATC
Downstream 100 bases:
>100_bases GCGCGCCATCGATCACCTGGTCTGTTATGACATCCGCAAGCCGGCCCGCCTGCGCCGTGTCCATCGGCTGATGAAGGAAT GGGGCGTGCCGCTGCAGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MPRLEPRTLYLNAERIQVRYEGSALRLCRPGKAAEYVPLARVSRAVVRGSAGEGLLQACLALVEAGAVVHFQDGHGQPTA CLQPAQEPQNRPVQELTSLIETQTGLVPYHWWRDAQRRHAWSLVFRRGPRGDFQSACRRLEDYLRKLSPLRWIPHEIAAL GGGLQSWLQAELHRSGWRPACRALAAQGEDLEGELRRCLYIPLLLRFVRWRRHQPPELTERRRVEFLELQLARPVPSQLH RHLQALTEEYYVSWQRMRREEPAHG
Sequences:
>Translated_265_residues MPRLEPRTLYLNAERIQVRYEGSALRLCRPGKAAEYVPLARVSRAVVRGSAGEGLLQACLALVEAGAVVHFQDGHGQPTA CLQPAQEPQNRPVQELTSLIETQTGLVPYHWWRDAQRRHAWSLVFRRGPRGDFQSACRRLEDYLRKLSPLRWIPHEIAAL GGGLQSWLQAELHRSGWRPACRALAAQGEDLEGELRRCLYIPLLLRFVRWRRHQPPELTERRRVEFLELQLARPVPSQLH RHLQALTEEYYVSWQRMRREEPAHG >Mature_264_residues PRLEPRTLYLNAERIQVRYEGSALRLCRPGKAAEYVPLARVSRAVVRGSAGEGLLQACLALVEAGAVVHFQDGHGQPTAC LQPAQEPQNRPVQELTSLIETQTGLVPYHWWRDAQRRHAWSLVFRRGPRGDFQSACRRLEDYLRKLSPLRWIPHEIAALG GGLQSWLQAELHRSGWRPACRALAAQGEDLEGELRRCLYIPLLLRFVRWRRHQPPELTERRRVEFLELQLARPVPSQLHR HLQALTEEYYVSWQRMRREEPAHG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30671; Mature: 30539
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLEPRTLYLNAERIQVRYEGSALRLCRPGKAAEYVPLARVSRAVVRGSAGEGLLQACL CCCCCCEEEEEEHEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH ALVEAGAVVHFQDGHGQPTACLQPAQEPQNRPVQELTSLIETQTGLVPYHWWRDAQRRHA HHHHCCCEEEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH WSLVFRRGPRGDFQSACRRLEDYLRKLSPLRWIPHEIAALGGGLQSWLQAELHRSGWRPA HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCHH CRALAAQGEDLEGELRRCLYIPLLLRFVRWRRHQPPELTERRRVEFLELQLARPVPSQLH HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH RHLQALTEEYYVSWQRMRREEPAHG HHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PRLEPRTLYLNAERIQVRYEGSALRLCRPGKAAEYVPLARVSRAVVRGSAGEGLLQACL CCCCCEEEEEEHEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH ALVEAGAVVHFQDGHGQPTACLQPAQEPQNRPVQELTSLIETQTGLVPYHWWRDAQRRHA HHHHCCCEEEEECCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH WSLVFRRGPRGDFQSACRRLEDYLRKLSPLRWIPHEIAALGGGLQSWLQAELHRSGWRPA HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCHH CRALAAQGEDLEGELRRCLYIPLLLRFVRWRRHQPPELTERRRVEFLELQLARPVPSQLH HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHH RHLQALTEEYYVSWQRMRREEPAHG HHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA