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The map label for this gene is nusB [H]

Identifier: 121611696

GI number: 121611696

Start: 5293184

End: 5293714

Strand: Direct

Name: nusB [H]

Synonym: Veis_4793

Alternate gene names: 121611696

Gene position: 5293184-5293714 (Clockwise)

Preceding gene: 121611695

Following gene: 121611697

Centisome position: 95.09

GC content: 69.3

Gene sequence:

>531_bases
ATGAGCACGAACCACGACGCCGCGCCGGCTGACGCTCGACCGCCCCCGGCAGCGCGCGCCAAGGCCATCGGCGGGCGCGG
GCCGGGCGCGCGCCTGCCCCGCAGCCGCGCGCGCGAATTCGCGCTGCAGGCGCTGTACCAGCACCTGGTGGGCGGCAACG
ATGCGGCGGACATCGACGAATTCACGCGCGGCCTGGCCGGTTTTCACAAGGCCGATGCGGCGCATTACCAGACCCTGCTG
CATGGCTGCATCGGCGCGGCAGCGGACATCGATGCGCTGATCGTCCCGCTGCTGGACCGCCAGTTGATCGCCATCTCGCC
GATAGAGCGCGCCACGATGTGGATCGGCGTGTACGAATTTCAGCATTGCCCGGACGTGCCCTGGCGCGTGGTGCTCAATG
AATGCATCGAACTGGCCAAGGAATTTGGCGGCACCGACGGCCACAAGTACGTCAACGCCATGCTCAACGCTCTGGCGCCG
CGTCTGCGCGCCGCCGAAGTGGCGGCCGACAGGGCCAGGGCAGCGCCCTGA

Upstream 100 bases:

>100_bases
CCGTCGAGAACCTCGAGCAGGCCATTGCCCGCCAGAGCGAAAAGGGCGCCGACGCCGCCCGCGTGGCGGTGGAAATGGCC
AATTTGCTGGACGCGCTGTC

Downstream 100 bases:

>100_bases
GCGAGACCCGAGCCGCCCGGGCCGGATGCGCTGCGCATCGGCCCGGGCCACGTTGCGCCCTGCAAGAATCGCCAGCACCT
CTTTTTTGAAACGACGCCGA

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSTNHDAAPADARPPPAARAKAIGGRGPGARLPRSRAREFALQALYQHLVGGNDAADIDEFTRGLAGFHKADAAHYQTLL
HGCIGAAADIDALIVPLLDRQLIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKYVNAMLNALAP
RLRAAEVAADRARAAP

Sequences:

>Translated_176_residues
MSTNHDAAPADARPPPAARAKAIGGRGPGARLPRSRAREFALQALYQHLVGGNDAADIDEFTRGLAGFHKADAAHYQTLL
HGCIGAAADIDALIVPLLDRQLIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKYVNAMLNALAP
RLRAAEVAADRARAAP
>Mature_175_residues
STNHDAAPADARPPPAARAKAIGGRGPGARLPRSRAREFALQALYQHLVGGNDAADIDEFTRGLAGFHKADAAHYQTLLH
GCIGAAADIDALIVPLLDRQLIAISPIERATMWIGVYEFQHCPDVPWRVVLNECIELAKEFGGTDGHKYVNAMLNALAPR
LRAAEVAADRARAAP

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=125, Percent_Identity=38.4, Blast_Score=94, Evalue=7e-21,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 18877; Mature: 18745

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNHDAAPADARPPPAARAKAIGGRGPGARLPRSRAREFALQALYQHLVGGNDAADIDE
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH
FTRGLAGFHKADAAHYQTLLHGCIGAAADIDALIVPLLDRQLIAISPIERATMWIGVYEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHH
QHCPDVPWRVVLNECIELAKEFGGTDGHKYVNAMLNALAPRLRAAEVAADRARAAP
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
STNHDAAPADARPPPAARAKAIGGRGPGARLPRSRAREFALQALYQHLVGGNDAADIDE
CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHH
FTRGLAGFHKADAAHYQTLLHGCIGAAADIDALIVPLLDRQLIAISPIERATMWIGVYEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHH
QHCPDVPWRVVLNECIELAKEFGGTDGHKYVNAMLNALAPRLRAAEVAADRARAAP
CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA