| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is potA [H]
Identifier: 121611657
GI number: 121611657
Start: 5243648
End: 5244370
Strand: Direct
Name: potA [H]
Synonym: Veis_4752
Alternate gene names: 121611657
Gene position: 5243648-5244370 (Clockwise)
Preceding gene: 121611656
Following gene: 121611658
Centisome position: 94.2
GC content: 63.35
Gene sequence:
>723_bases ATGCTGGCACTGGTGCGGCTCACGGAACTGGGCGCGCGCAAACCCGCGCAGTTGTCGGGCGGACAGCAGCAGCGCGTGGC TTTGGCCCGCGCACTGGCAACCCATCCGCGTGTGCTGCTGCTGGACGAATCCCTGTCCGCGCTGGACTTGCAACTGCGCA AGGAAATGCAGGTAGAACTCAAACGCTTGCAGCGCGAGACCGGCATCACCTTCGTGTTCGTGACGCATGACCAGGAAGAA GCCCTGACGATGTCGGACCGCATTGCAGTCATGTGCGCAGGCAGAGTCCAGCAAGTGGGGTCGCCGGCGCAAATATACGA GCGGCCAACGAACCGCTTCGTCGCAAGTTTCATTGGTGAAACCAACCTCTTGCGCGCCATCGCGCAAGAGGGCGTGCTGG ACTTCGGCCATGCCGGACGGATGGCCTTGCCCGACAGTTCGTGGACGGGGCCACTGACTCTGGCCGTGCGGCCCGAGCGG CTGCAATTGATCACCGCCGAAATGGCGGCCGCATTGCAATCCCAAGGCGCATCCGTATTGCAGGGCACCGTGCGCAACCT GGTGTACATGGGGCATGACACCACCTACTCAGTGCAACTCCAGGGCCAGGCACTGTGCAGTGTGCGAACGCAAAACGCGC AGGGTGCGGCGCAGGTGTTTGCGGTCGGCGATGCAGTGGGTCTGCGCCTGGATGCAGCCGCATTGCGGCGGCTGAACGAT TGA
Upstream 100 bases:
>100_bases CCGCATATGACCGTGGCGCAAAACATCGCCTTCGGTCCGCAGATGCAGCGCAAACCCGCAGCGCAAACCCGCAGCGCAAA TCAACGCGACGGTAGAAAAA
Downstream 100 bases:
>100_bases CTGGAACTACCATGCAGATGCCGCGCATTGCCCCGCCTGCCTTGCGACGCTTCAGCCAGCGCTGGGGACAGTGGCTGCTG CTGGCACCCACATTGGCGAC
Product: transport-associated OB domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MLALVRLTELGARKPAQLSGGQQQRVALARALATHPRVLLLDESLSALDLQLRKEMQVELKRLQRETGITFVFVTHDQEE ALTMSDRIAVMCAGRVQQVGSPAQIYERPTNRFVASFIGETNLLRAIAQEGVLDFGHAGRMALPDSSWTGPLTLAVRPER LQLITAEMAAALQSQGASVLQGTVRNLVYMGHDTTYSVQLQGQALCSVRTQNAQGAAQVFAVGDAVGLRLDAAALRRLND
Sequences:
>Translated_240_residues MLALVRLTELGARKPAQLSGGQQQRVALARALATHPRVLLLDESLSALDLQLRKEMQVELKRLQRETGITFVFVTHDQEE ALTMSDRIAVMCAGRVQQVGSPAQIYERPTNRFVASFIGETNLLRAIAQEGVLDFGHAGRMALPDSSWTGPLTLAVRPER LQLITAEMAAALQSQGASVLQGTVRNLVYMGHDTTYSVQLQGQALCSVRTQNAQGAAQVFAVGDAVGLRLDAAALRRLND >Mature_240_residues MLALVRLTELGARKPAQLSGGQQQRVALARALATHPRVLLLDESLSALDLQLRKEMQVELKRLQRETGITFVFVTHDQEE ALTMSDRIAVMCAGRVQQVGSPAQIYERPTNRFVASFIGETNLLRAIAQEGVLDFGHAGRMALPDSSWTGPLTLAVRPER LQLITAEMAAALQSQGASVLQGTVRNLVYMGHDTTYSVQLQGQALCSVRTQNAQGAAQVFAVGDAVGLRLDAAALRRLND
Specific function: Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system [H]
COG id: COG3842
COG function: function code E; ABC-type spermidine/putrescine transport systems, ATPase components
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=92, Percent_Identity=43.4782608695652, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI148612844, Length=88, Percent_Identity=45.4545454545455, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI9961250, Length=92, Percent_Identity=41.304347826087, Blast_Score=64, Evalue=8e-11, Organism=Homo sapiens, GI4505771, Length=92, Percent_Identity=41.304347826087, Blast_Score=64, Evalue=9e-11, Organism=Homo sapiens, GI42741659, Length=92, Percent_Identity=41.304347826087, Blast_Score=64, Evalue=9e-11, Organism=Escherichia coli, GI1787370, Length=129, Percent_Identity=67.4418604651163, Blast_Score=176, Evalue=1e-45, Organism=Escherichia coli, GI1787712, Length=203, Percent_Identity=48.2758620689655, Blast_Score=166, Evalue=9e-43, Organism=Escherichia coli, GI87081791, Length=224, Percent_Identity=42.4107142857143, Blast_Score=165, Evalue=2e-42, Organism=Escherichia coli, GI87081709, Length=205, Percent_Identity=40.4878048780488, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1788761, Length=159, Percent_Identity=48.4276729559748, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI1790467, Length=258, Percent_Identity=37.984496124031, Blast_Score=137, Evalue=5e-34, Organism=Escherichia coli, GI87082267, Length=167, Percent_Identity=42.5149700598802, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI1789032, Length=104, Percent_Identity=51.9230769230769, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788450, Length=137, Percent_Identity=45.2554744525547, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI145693107, Length=107, Percent_Identity=39.2523364485981, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787500, Length=113, Percent_Identity=36.283185840708, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787029, Length=120, Percent_Identity=41.6666666666667, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786398, Length=121, Percent_Identity=36.3636363636364, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1789962, Length=122, Percent_Identity=36.8852459016393, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786563, Length=119, Percent_Identity=44.5378151260504, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787164, Length=82, Percent_Identity=53.6585365853659, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1787758, Length=101, Percent_Identity=39.6039603960396, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789672, Length=120, Percent_Identity=35.8333333333333, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1788644, Length=107, Percent_Identity=40.1869158878505, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787089, Length=113, Percent_Identity=41.5929203539823, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788225, Length=122, Percent_Identity=40.1639344262295, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1789891, Length=84, Percent_Identity=46.4285714285714, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1787547, Length=110, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994883, Length=136, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788506, Length=101, Percent_Identity=32.6732673267327, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786872, Length=120, Percent_Identity=35, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1786253, Length=94, Percent_Identity=42.5531914893617, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787759, Length=125, Percent_Identity=32, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1789963, Length=115, Percent_Identity=33.9130434782609, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1786981, Length=106, Percent_Identity=40.5660377358491, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48994997, Length=99, Percent_Identity=34.3434343434343, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1790190, Length=79, Percent_Identity=41.7721518987342, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789864, Length=116, Percent_Identity=30.1724137931034, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1790162, Length=101, Percent_Identity=35.6435643564356, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786703, Length=84, Percent_Identity=46.4285714285714, Blast_Score=64, Evalue=6e-12, Organism=Escherichia coli, GI1790739, Length=103, Percent_Identity=39.8058252427184, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87081834, Length=85, Percent_Identity=42.3529411764706, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1790544, Length=104, Percent_Identity=35.5769230769231, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1786345, Length=104, Percent_Identity=36.5384615384615, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193202349, Length=97, Percent_Identity=41.2371134020619, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI25146777, Length=99, Percent_Identity=38.3838383838384, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17565938, Length=94, Percent_Identity=41.4893617021277, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17567265, Length=98, Percent_Identity=41.8367346938776, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17558664, Length=102, Percent_Identity=39.2156862745098, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567269, Length=98, Percent_Identity=42.8571428571429, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115535101, Length=106, Percent_Identity=41.5094339622642, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17511077, Length=97, Percent_Identity=37.1134020618557, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17541710, Length=98, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI85726357, Length=115, Percent_Identity=37.3913043478261, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI17136662, Length=140, Percent_Identity=33.5714285714286, Blast_Score=68, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR008995 - InterPro: IPR017879 - InterPro: IPR005893 - InterPro: IPR013611 [H]
Pfam domain/function: PF00005 ABC_tran; PF08402 TOBE_2 [H]
EC number: =3.6.3.31 [H]
Molecular weight: Translated: 26056; Mature: 26056
Theoretical pI: Translated: 8.75; Mature: 8.75
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLALVRLTELGARKPAQLSGGQQQRVALARALATHPRVLLLDESLSALDLQLRKEMQVEL CEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHH KRLQRETGITFVFVTHDQEEALTMSDRIAVMCAGRVQQVGSPAQIYERPTNRFVASFIGE HHHHHHHCCEEEEEECCCHHHHHHHCCEEEEECHHHHHCCCCHHHHHCHHHHHHHHHHCH TNLLRAIAQEGVLDFGHAGRMALPDSSWTGPLTLAVRPERLQLITAEMAAALQSQGASVL HHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHH QGTVRNLVYMGHDTTYSVQLQGQALCSVRTQNAQGAAQVFAVGDAVGLRLDAAALRRLND HHHHHHEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCHHCCEECHHHHHHCCC >Mature Secondary Structure MLALVRLTELGARKPAQLSGGQQQRVALARALATHPRVLLLDESLSALDLQLRKEMQVEL CEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHH KRLQRETGITFVFVTHDQEEALTMSDRIAVMCAGRVQQVGSPAQIYERPTNRFVASFIGE HHHHHHHCCEEEEEECCCHHHHHHHCCEEEEECHHHHHCCCCHHHHHCHHHHHHHHHHCH TNLLRAIAQEGVLDFGHAGRMALPDSSWTGPLTLAVRPERLQLITAEMAAALQSQGASVL HHHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCHHHH QGTVRNLVYMGHDTTYSVQLQGQALCSVRTQNAQGAAQVFAVGDAVGLRLDAAALRRLND HHHHHHEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCHHCCEECHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA