| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is 121611187
Identifier: 121611187
GI number: 121611187
Start: 4711166
End: 4712185
Strand: Direct
Name: 121611187
Synonym: Veis_4271
Alternate gene names: NA
Gene position: 4711166-4712185 (Clockwise)
Preceding gene: 121611177
Following gene: 121611188
Centisome position: 84.63
GC content: 65.88
Gene sequence:
>1020_bases ATGGCCGACACTCGCGGGCATTGCGAATCGAAGGAGTCCCGCGTGCCTTACGAGCCCATCCGGATCCGGCGCCAGTGGCT GGCAGCCGTCATGCTGCTGGCGGCGGGCAGTGCCGCACAGACCCAGGACTTCCCCAACCGGCCGATCCGCCTGATTGCCC CGTTTGCGGCCGGCGCCAGCACCGACTTCCTGGCGCGCACGATCGCGCAAACCATGTCCAGAAACCTGGGGCAACCCGTG GTGGTGGACAACAAGCCCGGCGCCGGCGGCATCCTGGCCGCCGAGCAGACGGCGCGCGCCGCGCCGGACGGTTACACCTT CATGCTGACGTCCGCCGGCATCGTCACGATGAACCAAAGCATCTACAGCCAGTTGCCCTACGACCCGATCAAGGAATTCG CGCCGCTCACGATCGCCGTGCGCATGCCGATCGTCGTCGTGGTGCACCCGTCGCTGCCGGTCAAGAGCGTGCCGGAGTTG CTCGCCTATGCGCATGCCCACCCCGGCAAGCTCTCCTACGGATCGTCCGGGGTCGGCACCTCACAGCACCTGGCGGGCGA GTTGTTCAAGTCGATGACCAAGGCCAGCATCCTGCACATCCCCTACCGGGGCGGCGGCCCGGCGATGAATGACCTGTTGG CCAACCAGATCGGCCTGATGTTCGTGCAACTACCGTCGGCTCTGCCGCAGATTCAGGCGGGCAAGGTGCGCGCCATAGCC ATCGGCAGCGAGCAGCGCGACCCGAAATTGCCGGCTGTCCCGACGGTGTCCGAGTCGGGCCTGAAGGGCTACAACTCGGA CACCTGGTACGGCTTCGTGATGCCCACGGGAGCGCCACCGGCCATCGTGCAAACGCTGTACCAGGCCATCATCGCTGCGC TGAAGGAAAACGCGCAGCGGCTGTCCGGGCATGGCTTCAATGTCGATGGCGGCAACCCGCAACAGATGGCCGACACGATA GCGACCGAGGCCAAAAAATGGGCGCTCGTGATCAAGGCCGCCGACATCAGGGCTGATTGA
Upstream 100 bases:
>100_bases ACGGGCATCTATCAGTGCACGAAAGCAGTATTTTCGTACTGTCATCAATATCAACATATGGACTATTTTTTGACCATTCC CTGCGCATCCCGGAAGCGGC
Downstream 100 bases:
>100_bases TGTGCAACACCCCCGAGGCGCCTTCGGCGCGCGCCGGGTTGGAGGCCGCGCCATGCACGAGCAAACCATGCGCCGCAAGG GCTTTCTGCTGCGCGCACCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MADTRGHCESKESRVPYEPIRIRRQWLAAVMLLAAGSAAQTQDFPNRPIRLIAPFAAGASTDFLARTIAQTMSRNLGQPV VVDNKPGAGGILAAEQTARAAPDGYTFMLTSAGIVTMNQSIYSQLPYDPIKEFAPLTIAVRMPIVVVVHPSLPVKSVPEL LAYAHAHPGKLSYGSSGVGTSQHLAGELFKSMTKASILHIPYRGGGPAMNDLLANQIGLMFVQLPSALPQIQAGKVRAIA IGSEQRDPKLPAVPTVSESGLKGYNSDTWYGFVMPTGAPPAIVQTLYQAIIAALKENAQRLSGHGFNVDGGNPQQMADTI ATEAKKWALVIKAADIRAD
Sequences:
>Translated_339_residues MADTRGHCESKESRVPYEPIRIRRQWLAAVMLLAAGSAAQTQDFPNRPIRLIAPFAAGASTDFLARTIAQTMSRNLGQPV VVDNKPGAGGILAAEQTARAAPDGYTFMLTSAGIVTMNQSIYSQLPYDPIKEFAPLTIAVRMPIVVVVHPSLPVKSVPEL LAYAHAHPGKLSYGSSGVGTSQHLAGELFKSMTKASILHIPYRGGGPAMNDLLANQIGLMFVQLPSALPQIQAGKVRAIA IGSEQRDPKLPAVPTVSESGLKGYNSDTWYGFVMPTGAPPAIVQTLYQAIIAALKENAQRLSGHGFNVDGGNPQQMADTI ATEAKKWALVIKAADIRAD >Mature_338_residues ADTRGHCESKESRVPYEPIRIRRQWLAAVMLLAAGSAAQTQDFPNRPIRLIAPFAAGASTDFLARTIAQTMSRNLGQPVV VDNKPGAGGILAAEQTARAAPDGYTFMLTSAGIVTMNQSIYSQLPYDPIKEFAPLTIAVRMPIVVVVHPSLPVKSVPELL AYAHAHPGKLSYGSSGVGTSQHLAGELFKSMTKASILHIPYRGGGPAMNDLLANQIGLMFVQLPSALPQIQAGKVRAIAI GSEQRDPKLPAVPTVSESGLKGYNSDTWYGFVMPTGAPPAIVQTLYQAIIAALKENAQRLSGHGFNVDGGNPQQMADTIA TEAKKWALVIKAADIRAD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 36073; Mature: 35942
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTRGHCESKESRVPYEPIRIRRQWLAAVMLLAAGSAAQTQDFPNRPIRLIAPFAAGAS CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEECCCCCC TDFLARTIAQTMSRNLGQPVVVDNKPGAGGILAAEQTARAAPDGYTFMLTSAGIVTMNQS HHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEECHHHHCCCCCCEEEEEECCCEEEECHH IYSQLPYDPIKEFAPLTIAVRMPIVVVVHPSLPVKSVPELLAYAHAHPGKLSYGSSGVGT HHHHCCCCHHHHHCCEEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC SQHLAGELFKSMTKASILHIPYRGGGPAMNDLLANQIGLMFVQLPSALPQIQAGKVRAIA HHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHEEHHHHHCCCCCCCCEEEEE IGSEQRDPKLPAVPTVSESGLKGYNSDTWYGFVMPTGAPPAIVQTLYQAIIAALKENAQR ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH LSGHGFNVDGGNPQQMADTIATEAKKWALVIKAADIRAD HCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCC >Mature Secondary Structure ADTRGHCESKESRVPYEPIRIRRQWLAAVMLLAAGSAAQTQDFPNRPIRLIAPFAAGAS CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEECCCCCC TDFLARTIAQTMSRNLGQPVVVDNKPGAGGILAAEQTARAAPDGYTFMLTSAGIVTMNQS HHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEECHHHHCCCCCCEEEEEECCCEEEECHH IYSQLPYDPIKEFAPLTIAVRMPIVVVVHPSLPVKSVPELLAYAHAHPGKLSYGSSGVGT HHHHCCCCHHHHHCCEEEEEECCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC SQHLAGELFKSMTKASILHIPYRGGGPAMNDLLANQIGLMFVQLPSALPQIQAGKVRAIA HHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHEEHHHHHCCCCCCCCEEEEE IGSEQRDPKLPAVPTVSESGLKGYNSDTWYGFVMPTGAPPAIVQTLYQAIIAALKENAQR ECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH LSGHGFNVDGGNPQQMADTIATEAKKWALVIKAADIRAD HCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]