| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is gmk [H]
Identifier: 121611134
GI number: 121611134
Start: 4645865
End: 4646509
Strand: Direct
Name: gmk [H]
Synonym: Veis_4218
Alternate gene names: 121611134
Gene position: 4645865-4646509 (Clockwise)
Preceding gene: 121611131
Following gene: 121611135
Centisome position: 83.46
GC content: 60.93
Gene sequence:
>645_bases ATGGCGCATGACACGCATCGACCCATGGACTATCCAGGAAACCTCATCGTAGTGGCAGCCCCCAGCGGCGCCGGAAAATC CAGCCTGGTCAAGGCCCTGCAAGAGCTCGACGCGCACATTCACCCGTCGATTTCGCACACCACCCGCGCGCCCCGTGGCC AGGAAAAGCATGGGCGCGAGTATTTCTTCGCGTCCGAATCCGAGTTCGACGCCATGGTCCAGGCCCAGGCTTTCGTCGAA TGGGCGCATGTGCATGGCAAGCGCTATGGCACCTCGAAAAAAGCCATCGAAGAGCGCATCGCCCAAGGCTCGGATGTGAT CCTGGAGATCGATTTTCAGGGCGCCTTGCAGATCAGGCAGGCGTTCGCCAACGCCGTGCTGGTATTCATCCTGCCGCCGG GTTGGGACGAGTTGCGCTCGCGCCTGGAGCGCCGGGGCGAAGATTCGGCCGAGGTCATCGAAATGCGCCTGAAGAACGCG GCCATCGAGATGGCCCATGTCAGTAAATTCGATTTCGTTATAATCAACGAATTGTTCGAACGCGCGCTTTTCGACCTGAA AGCCGTGGTGCACGCCCAGCGCCTCAAGTACGCCGCCCAGCGCCGCGCCCGCGCTGACACCTTCGAGTCGCTCCACATCA GTTGA
Upstream 100 bases:
>100_bases GGGTTCAGAAGGTGTTGCATTGTGAAGATCCATAAAAATCAACGACTTGGAGCGCATCTCACGCTTCAGGTGCAAAACAT CGAATGAAGCCCGTCTTTTG
Downstream 100 bases:
>100_bases CGAATCACCCGAAATCCCCGAAAGGAAGACGATGGCCCGCATCACCGTAGAAGACTGTCTGGAAAAGATCCCCAACCGCT TCCAACTCGTGTTGGCCGCC
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase [H]
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MAHDTHRPMDYPGNLIVVAAPSGAGKSSLVKALQELDAHIHPSISHTTRAPRGQEKHGREYFFASESEFDAMVQAQAFVE WAHVHGKRYGTSKKAIEERIAQGSDVILEIDFQGALQIRQAFANAVLVFILPPGWDELRSRLERRGEDSAEVIEMRLKNA AIEMAHVSKFDFVIINELFERALFDLKAVVHAQRLKYAAQRRARADTFESLHIS
Sequences:
>Translated_214_residues MAHDTHRPMDYPGNLIVVAAPSGAGKSSLVKALQELDAHIHPSISHTTRAPRGQEKHGREYFFASESEFDAMVQAQAFVE WAHVHGKRYGTSKKAIEERIAQGSDVILEIDFQGALQIRQAFANAVLVFILPPGWDELRSRLERRGEDSAEVIEMRLKNA AIEMAHVSKFDFVIINELFERALFDLKAVVHAQRLKYAAQRRARADTFESLHIS >Mature_213_residues AHDTHRPMDYPGNLIVVAAPSGAGKSSLVKALQELDAHIHPSISHTTRAPRGQEKHGREYFFASESEFDAMVQAQAFVEW AHVHGKRYGTSKKAIEERIAQGSDVILEIDFQGALQIRQAFANAVLVFILPPGWDELRSRLERRGEDSAEVIEMRLKNAA IEMAHVSKFDFVIINELFERALFDLKAVVHAQRLKYAAQRRARADTFESLHIS
Specific function: Essential for recycling GMP and indirectly, cGMP [H]
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain [H]
Homologues:
Organism=Homo sapiens, GI226874831, Length=176, Percent_Identity=35.2272727272727, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI226874833, Length=176, Percent_Identity=35.2272727272727, Blast_Score=105, Evalue=2e-23, Organism=Homo sapiens, GI4504221, Length=176, Percent_Identity=35.2272727272727, Blast_Score=105, Evalue=2e-23, Organism=Homo sapiens, GI38570142, Length=179, Percent_Identity=27.9329608938547, Blast_Score=78, Evalue=4e-15, Organism=Homo sapiens, GI14780902, Length=193, Percent_Identity=25.9067357512953, Blast_Score=77, Evalue=8e-15, Organism=Homo sapiens, GI21361598, Length=190, Percent_Identity=26.8421052631579, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI52630447, Length=189, Percent_Identity=26.4550264550265, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI262118255, Length=176, Percent_Identity=26.7045454545455, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI4505237, Length=176, Percent_Identity=26.7045454545455, Blast_Score=67, Evalue=9e-12, Organism=Homo sapiens, GI262118263, Length=176, Percent_Identity=26.7045454545455, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI262118259, Length=176, Percent_Identity=26.7045454545455, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI111154074, Length=164, Percent_Identity=28.6585365853659, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1790080, Length=194, Percent_Identity=50, Blast_Score=185, Evalue=2e-48, Organism=Caenorhabditis elegans, GI193203132, Length=185, Percent_Identity=36.7567567567568, Blast_Score=123, Evalue=9e-29, Organism=Caenorhabditis elegans, GI17508835, Length=176, Percent_Identity=36.9318181818182, Blast_Score=122, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6320662, Length=183, Percent_Identity=37.1584699453552, Blast_Score=126, Evalue=3e-30, Organism=Drosophila melanogaster, GI21356141, Length=164, Percent_Identity=40.8536585365854, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI45554489, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI24640542, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007136, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI161077626, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI85724806, Length=181, Percent_Identity=30.3867403314917, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI45554481, Length=181, Percent_Identity=30.3867403314917, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI221330162, Length=137, Percent_Identity=29.9270072992701, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI221330166, Length=137, Percent_Identity=29.9270072992701, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI221330164, Length=137, Percent_Identity=29.9270072992701, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 [H]
Pfam domain/function: PF00625 Guanylate_kin [H]
EC number: =2.7.4.8 [H]
Molecular weight: Translated: 24115; Mature: 23983
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHDTHRPMDYPGNLIVVAAPSGAGKSSLVKALQELDAHIHPSISHTTRAPRGQEKHGRE CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCE YFFASESEFDAMVQAQAFVEWAHVHGKRYGTSKKAIEERIAQGSDVILEIDFQGALQIRQ EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHH AFANAVLVFILPPGWDELRSRLERRGEDSAEVIEMRLKNAAIEMAHVSKFDFVIINELFE HHHCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RALFDLKAVVHAQRLKYAAQRRARADTFESLHIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AHDTHRPMDYPGNLIVVAAPSGAGKSSLVKALQELDAHIHPSISHTTRAPRGQEKHGRE CCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCE YFFASESEFDAMVQAQAFVEWAHVHGKRYGTSKKAIEERIAQGSDVILEIDFQGALQIRQ EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHH AFANAVLVFILPPGWDELRSRLERRGEDSAEVIEMRLKNAAIEMAHVSKFDFVIINELFE HHHCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH RALFDLKAVVHAQRLKYAAQRRARADTFESLHIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA