| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611078
Identifier: 121611078
GI number: 121611078
Start: 4579026
End: 4579493
Strand: Direct
Name: 121611078
Synonym: Veis_4162
Alternate gene names: NA
Gene position: 4579026-4579493 (Clockwise)
Preceding gene: 121611077
Following gene: 121611079
Centisome position: 82.26
GC content: 64.1
Gene sequence:
>468_bases ATGTCCACCGCTGCCCTTGTCAACGTGTCGCTGCCCGTCGAGCGTGAGGTGCAGGCCGCCCTGGAAGGACAGCGAGCCTT GGCCGCCTTCCTGGCCACGCGCGTGGAAACGCAGCAGATCCAGATTTTCGACGACAAGAACCAAGCCCATCGGGTGGAGC TGCCCACGTCCGCGCTGCGCCTGCTGGTGGACATCCTGGCGGAGCTCGCCGAAGGCAATGCCGTCAAGGTGGTGCCGGTC CATGCCGAACTCACGACCCAGGAGGCCGCCGACATGCTCAATGTGTCCCGGCCACACTTGGTCAAGCTACTCGAAGAGGG TGCACTTCCCTTCCACAGGGCCGGCAAGCATCGGCGCGTCCGCTTTGTCGACCTGATGCAGTTCAAGGCCCGGAGAGACC AAGCCAGCGAAGACGCCATGGCGGCGTTGGCGAAACAGGCTCAGGAACTGGGCATGGGCTACGAATGA
Upstream 100 bases:
>100_bases CGCCGCCCCAGTCATTTCGTTTATGTCATTTCGTTTATTGCGATTTTTGTTTGTTTCGAATAAAATCACCCACACCGTTC TTCAGATGCAGGAAGCCCCC
Downstream 100 bases:
>100_bases GGCAGTCGCCATTCACGGCCGTCTATGACGCATGCGTGTTGTACCCGGCGCCGTTACGGGACTTTCTCATGTGGCTGGGT CTTTCCGGCCGCTTCCGGGC
Product: DNA-binding domain-containing protein
Products: NA
Alternate protein names: Excisionase Domain Protein; Excisionase Domain-Containing Protein; Excisionase Protein; Transcriptional Regulator MerR Family; Type IIA poisomerase Subunit A; Plasmid-Related Excisionase; Type IIA poisomerase; Xin-Antitoxin System Antitoxin Component MerR Family; Excisionase/Xis
Number of amino acids: Translated: 155; Mature: 154
Protein sequence:
>155_residues MSTAALVNVSLPVEREVQAALEGQRALAAFLATRVETQQIQIFDDKNQAHRVELPTSALRLLVDILAELAEGNAVKVVPV HAELTTQEAADMLNVSRPHLVKLLEEGALPFHRAGKHRRVRFVDLMQFKARRDQASEDAMAALAKQAQELGMGYE
Sequences:
>Translated_155_residues MSTAALVNVSLPVEREVQAALEGQRALAAFLATRVETQQIQIFDDKNQAHRVELPTSALRLLVDILAELAEGNAVKVVPV HAELTTQEAADMLNVSRPHLVKLLEEGALPFHRAGKHRRVRFVDLMQFKARRDQASEDAMAALAKQAQELGMGYE >Mature_154_residues STAALVNVSLPVEREVQAALEGQRALAAFLATRVETQQIQIFDDKNQAHRVELPTSALRLLVDILAELAEGNAVKVVPVH AELTTQEAADMLNVSRPHLVKLLEEGALPFHRAGKHRRVRFVDLMQFKARRDQASEDAMAALAKQAQELGMGYE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17118; Mature: 16987
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTAALVNVSLPVEREVQAALEGQRALAAFLATRVETQQIQIFDDKNQAHRVELPTSALR CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCHHHHH LLVDILAELAEGNAVKVVPVHAELTTQEAADMLNVSRPHLVKLLEEGALPFHRAGKHRRV HHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCH RFVDLMQFKARRDQASEDAMAALAKQAQELGMGYE HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure STAALVNVSLPVEREVQAALEGQRALAAFLATRVETQQIQIFDDKNQAHRVELPTSALR CCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCHHHHH LLVDILAELAEGNAVKVVPVHAELTTQEAADMLNVSRPHLVKLLEEGALPFHRAGKHRRV HHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCCH RFVDLMQFKARRDQASEDAMAALAKQAQELGMGYE HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA