| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611055
Identifier: 121611055
GI number: 121611055
Start: 4538183
End: 4540477
Strand: Direct
Name: 121611055
Synonym: Veis_4139
Alternate gene names: NA
Gene position: 4538183-4540477 (Clockwise)
Preceding gene: 121611054
Following gene: 121611056
Centisome position: 81.52
GC content: 64.79
Gene sequence:
>2295_bases ATGGCCACCATCACGCTTGACAAGACAACCATCAAAGCCGGCGAGACCGCCGTAGTCACCTTTACGGTCGAGAAGACCCA CTTCATGGGCACCACCAATAGGTCTGGCGTCAGGACAGTCAATGACGTGACCATCACTGGCGGCACCATATCCGCCGGCT ACGACTTCCAATACGTCGAGGCCCTCAGCACCCCCACCACCCAGGTCTATCAAGGCACCTTCACGCCTACCCCGAACCTG GACAGAACCGAGTGCACCATCCGCTACAACCCTGACGGCACCGCCAACGACGCCACCAGCGCCACCTTCATCGTCGACAC CCGGGCGCCCACCATCACGGGCACCCCGACGATCGGCAACCCCAACCTGACCCGCGCCAACCAAGTAACCACCATCACCT TTGTCTTCTCCGAGCAGTTGAATCAGGCCAGTTTCACGACGGCTGACCTGACGATACCGGCGGGCATGGGCACGCTGGAG AACCTGCGCACCACCGACGGCGGCAGGTCTTGGCAGGTAGACCTGAGGGCGCCGGCCAACCTGGCGGCCAACACCGAAGC GAAGGACCTGCAGATCGGCATCAACATGGCCGGCATCACCGATGTCGCGGGCAACGCGGGCACGGGCAACGTCAACCTCG CCACCTACACCATCGACAACAAGCCGCCCAGCGCCACCATCGCCGTGACCCCCAACCCCGTCACGAGCAGCAATGACAGA CTGGTCACCGTCACCATCACCTTCGACGAGGCAGTCACCGGCTTCACGGCAGACAACATCGATTTCAGCAACGCCAATGT CACGCCCTATGGCACCAACCGGATAGGGACGCTGAACCGCTCAGCCGACGGCCGCACCTACACCATCACCTACACGGCAG GGCCGGACGTCGAGGATGCCACCAACACCATCAGCCTGCGCAACATCGATACCATCCGTGATGCCGTAGGCAACGCCGCA ACGGTCAACCCCACCAGCAACAACTACGTGATCGACACCAAGGATCCCGGGGTCACCAACATTACGGTCGACAAAACGCA CCTCACCGCCGGCGACACCGCCACCATCACCGTCACCTTCAACGAGAGCGTCAGTGGCTTCACCGAAGCTGCCATCGAGA TCGCCAACGGTTCTGTGAGCAACCTGAGGCCGGTCGCCGGCACCGACGGCAGAGTCTGGACAGCCACCTTCACACCCACG GCCAACTTGGCGCGCACCAGCGTTGACCGGATCGAAGTGAGACTGGACGGCATAACGGACCGCATCGGCAACAACAGCTT CGGCACCAACGCGCGCGATATCCCCGCCATCGTCATCGACACCAAGGTCTTTGTCGTCAACAACGCCACGGTGAACGGCA AGCAGTTGGTATTGCAGTACAGCGATGAAACCAGGCTGGACCCGGACCAGACCCACAACGCGCCCAACGATGCCTTCGTG GTGCTGGTCGATGGCGTGCGCAACAGCGTCACCGGCGTGCTCGTGGATGCAGCGGCCAAGACCGTCACGCTGACGTTGGA GCGCGCGGTGAGCAAGGGCCAGCAGGTGAGCGTCGCCTACAACGACCCCAGCACCGGCGACGACCCGCAAGCGGTGCAGG AGGCCACCACCGGCAAAGACGCGGCCAGCTTCGCGGCCAAGCCGGTGACCAACCTCACCCCGGCTCCGCCCGAGCCGGAT GCACCGGATGCAGGTGCGCCGGACTCCGACCGCGACGGTCTGTCCAACAACCGGGAGGACCAGGCCCCCGGCCTGCTGCG CCCCGATGGCTCGGCCGGCCTGGCTGGCGACGGCAACGGCGATGGCGTCAAAGACAGCCAGCAGGTCGCCGTCGCTTCGA CCCGTGACCTGACCCTGGTGGCCGGCAGCCGGGACGGCAAACTGATCCCCGACAGCAACGCGCGCATCACCGAACTGGTG CGCAGCGATGCCCCGGCCAACCTGCCCAAGGGCATGGAGATGCCGCTCGGCCTGACCTCATTCAAGGTATCGCTGGCCGA GGGCCGCAGCACCGAGAGCTTCAGCCTGTACGTAGACCAGGCGCTCGGCGCCAACGGCTACTGGCTCAAGAACAGCGCCG GCACCTGGGTGAACCTGGCCAGCGAACCCTACGGCGGCAAAGTGAGCAGCGAAGGCGGGCGCACGCGGCTGGACTTTCAG ATCCAGGACGGCGGCGAGTACGACGCCGACGGCCAGGCCGATGGCAGCATCACCGCCCCCGGCGCCGTGGCGAAGATGCC GCTGTCCATCGTCGGGCAGGCGCCCCAGGTCGATTCGCATGGGTACTGGTTCTAG
Upstream 100 bases:
>100_bases ATTGTGTCAAAAGGAAAGCGCCGTGACCGCAGCCCTCCTGCCTGAATTCGGCGCATTCGGCGCACCAGCGCAATCCACAT CCCATTGAAAGGAAAGCCCC
Downstream 100 bases:
>100_bases TGTCGCGTCACTGATCAGATGTCGTAGGCTGCGCGCAGCCATCGGAGCGCAGCGCAAGGCGCATCGCGCAGCCAATACCG AGCGTATTGGCAAGCGATGC
Product: outer membrane protein
Products: NA
Alternate protein names: Glycosyl Hydrolase BNR Repeat; Flagellar Hook-Length Control Protein FliK; S-Layer Domain Protein; BNR Repeat-Containing Glycosyl Hydrolase; RTX xin; Outer Membrane Adhesin Like Proteiin; Pyrrolo-Quinoline Quinone; Outer Membrane Adhesin Like Protein
Number of amino acids: Translated: 764; Mature: 763
Protein sequence:
>764_residues MATITLDKTTIKAGETAVVTFTVEKTHFMGTTNRSGVRTVNDVTITGGTISAGYDFQYVEALSTPTTQVYQGTFTPTPNL DRTECTIRYNPDGTANDATSATFIVDTRAPTITGTPTIGNPNLTRANQVTTITFVFSEQLNQASFTTADLTIPAGMGTLE NLRTTDGGRSWQVDLRAPANLAANTEAKDLQIGINMAGITDVAGNAGTGNVNLATYTIDNKPPSATIAVTPNPVTSSNDR LVTVTITFDEAVTGFTADNIDFSNANVTPYGTNRIGTLNRSADGRTYTITYTAGPDVEDATNTISLRNIDTIRDAVGNAA TVNPTSNNYVIDTKDPGVTNITVDKTHLTAGDTATITVTFNESVSGFTEAAIEIANGSVSNLRPVAGTDGRVWTATFTPT ANLARTSVDRIEVRLDGITDRIGNNSFGTNARDIPAIVIDTKVFVVNNATVNGKQLVLQYSDETRLDPDQTHNAPNDAFV VLVDGVRNSVTGVLVDAAAKTVTLTLERAVSKGQQVSVAYNDPSTGDDPQAVQEATTGKDAASFAAKPVTNLTPAPPEPD APDAGAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSQQVAVASTRDLTLVAGSRDGKLIPDSNARITELV RSDAPANLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDQALGANGYWLKNSAGTWVNLASEPYGGKVSSEGGRTRLDFQ IQDGGEYDADGQADGSITAPGAVAKMPLSIVGQAPQVDSHGYWF
Sequences:
>Translated_764_residues MATITLDKTTIKAGETAVVTFTVEKTHFMGTTNRSGVRTVNDVTITGGTISAGYDFQYVEALSTPTTQVYQGTFTPTPNL DRTECTIRYNPDGTANDATSATFIVDTRAPTITGTPTIGNPNLTRANQVTTITFVFSEQLNQASFTTADLTIPAGMGTLE NLRTTDGGRSWQVDLRAPANLAANTEAKDLQIGINMAGITDVAGNAGTGNVNLATYTIDNKPPSATIAVTPNPVTSSNDR LVTVTITFDEAVTGFTADNIDFSNANVTPYGTNRIGTLNRSADGRTYTITYTAGPDVEDATNTISLRNIDTIRDAVGNAA TVNPTSNNYVIDTKDPGVTNITVDKTHLTAGDTATITVTFNESVSGFTEAAIEIANGSVSNLRPVAGTDGRVWTATFTPT ANLARTSVDRIEVRLDGITDRIGNNSFGTNARDIPAIVIDTKVFVVNNATVNGKQLVLQYSDETRLDPDQTHNAPNDAFV VLVDGVRNSVTGVLVDAAAKTVTLTLERAVSKGQQVSVAYNDPSTGDDPQAVQEATTGKDAASFAAKPVTNLTPAPPEPD APDAGAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSQQVAVASTRDLTLVAGSRDGKLIPDSNARITELV RSDAPANLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDQALGANGYWLKNSAGTWVNLASEPYGGKVSSEGGRTRLDFQ IQDGGEYDADGQADGSITAPGAVAKMPLSIVGQAPQVDSHGYWF >Mature_763_residues ATITLDKTTIKAGETAVVTFTVEKTHFMGTTNRSGVRTVNDVTITGGTISAGYDFQYVEALSTPTTQVYQGTFTPTPNLD RTECTIRYNPDGTANDATSATFIVDTRAPTITGTPTIGNPNLTRANQVTTITFVFSEQLNQASFTTADLTIPAGMGTLEN LRTTDGGRSWQVDLRAPANLAANTEAKDLQIGINMAGITDVAGNAGTGNVNLATYTIDNKPPSATIAVTPNPVTSSNDRL VTVTITFDEAVTGFTADNIDFSNANVTPYGTNRIGTLNRSADGRTYTITYTAGPDVEDATNTISLRNIDTIRDAVGNAAT VNPTSNNYVIDTKDPGVTNITVDKTHLTAGDTATITVTFNESVSGFTEAAIEIANGSVSNLRPVAGTDGRVWTATFTPTA NLARTSVDRIEVRLDGITDRIGNNSFGTNARDIPAIVIDTKVFVVNNATVNGKQLVLQYSDETRLDPDQTHNAPNDAFVV LVDGVRNSVTGVLVDAAAKTVTLTLERAVSKGQQVSVAYNDPSTGDDPQAVQEATTGKDAASFAAKPVTNLTPAPPEPDA PDAGAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNGDGVKDSQQVAVASTRDLTLVAGSRDGKLIPDSNARITELVR SDAPANLPKGMEMPLGLTSFKVSLAEGRSTESFSLYVDQALGANGYWLKNSAGTWVNLASEPYGGKVSSEGGRTRLDFQI QDGGEYDADGQADGSITAPGAVAKMPLSIVGQAPQVDSHGYWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80061; Mature: 79929
Theoretical pI: Translated: 4.27; Mature: 4.27
Prosite motif: PS00144 ASN_GLN_ASE_1 ; PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATITLDKTTIKAGETAVVTFTVEKTHFMGTTNRSGVRTVNDVTITGGTISAGYDFQYVE CEEEEEECEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEEEECCEEECCCCEEEHH ALSTPTTQVYQGTFTPTPNLDRTECTIRYNPDGTANDATSATFIVDTRAPTITGTPTIGN HHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEECCCCCCC PNLTRANQVTTITFVFSEQLNQASFTTADLTIPAGMGTLENLRTTDGGRSWQVDLRAPAN CCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCEEEEEECCCCC LAANTEAKDLQIGINMAGITDVAGNAGTGNVNLATYTIDNKPPSATIAVTPNPVTSSNDR CCCCCCCCEEEEEEEECCEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCE LVTVTITFDEAVTGFTADNIDFSNANVTPYGTNRIGTLNRSADGRTYTITYTAGPDVEDA EEEEEEEECCCCCCEEECCEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCC TNTISLRNIDTIRDAVGNAATVNPTSNNYVIDTKDPGVTNITVDKTHLTAGDTATITVTF CCEEEECCCHHHHHHCCCCEEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEEE NESVSGFTEAAIEIANGSVSNLRPVAGTDGRVWTATFTPTANLARTSVDRIEVRLDGITD CCCCCCCEEEEEEECCCCHHCCCCCCCCCCEEEEEEECCCCHHHHCCCEEEEEEECCHHH RIGNNSFGTNARDIPAIVIDTKVFVVNNATVNGKQLVLQYSDETRLDPDQTHNAPNDAFV HCCCCCCCCCCCCCCEEEEEEEEEEEECCEECCEEEEEEECCCCCCCCHHCCCCCCCEEE VLVDGVRNSVTGVLVDAAAKTVTLTLERAVSKGQQVSVAYNDPSTGDDPQAVQEATTGKD EEECCCCCCCEEEEEECCCEEEEEEEHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCC AASFAAKPVTNLTPAPPEPDAPDAGAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC DGVKDSQQVAVASTRDLTLVAGSRDGKLIPDSNARITELVRSDAPANLPKGMEMPLGLTS CCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEE FKVSLAEGRSTESFSLYVDQALGANGYWLKNSAGTWVNLASEPYGGKVSSEGGRTRLDFQ EEEEECCCCCCCEEEEEEEHHCCCCCEEEECCCCCEEEECCCCCCCEECCCCCCEEEEEE IQDGGEYDADGQADGSITAPGAVAKMPLSIVGQAPQVDSHGYWF ECCCCCCCCCCCCCCCEECCCHHHHCCHHHCCCCCCCCCCCCCC >Mature Secondary Structure ATITLDKTTIKAGETAVVTFTVEKTHFMGTTNRSGVRTVNDVTITGGTISAGYDFQYVE EEEEEECEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEEEECCEEECCCCEEEHH ALSTPTTQVYQGTFTPTPNLDRTECTIRYNPDGTANDATSATFIVDTRAPTITGTPTIGN HHCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEECCCCCCC PNLTRANQVTTITFVFSEQLNQASFTTADLTIPAGMGTLENLRTTDGGRSWQVDLRAPAN CCCCCCCCEEEEEEEEECCCCCCEEEEEEEEEECCCCCHHHCCCCCCCCEEEEEECCCCC LAANTEAKDLQIGINMAGITDVAGNAGTGNVNLATYTIDNKPPSATIAVTPNPVTSSNDR CCCCCCCCEEEEEEEECCEEECCCCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCE LVTVTITFDEAVTGFTADNIDFSNANVTPYGTNRIGTLNRSADGRTYTITYTAGPDVEDA EEEEEEEECCCCCCEEECCEECCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCC TNTISLRNIDTIRDAVGNAATVNPTSNNYVIDTKDPGVTNITVDKTHLTAGDTATITVTF CCEEEECCCHHHHHHCCCCEEECCCCCCEEEECCCCCEEEEEEEEEEECCCCEEEEEEEE NESVSGFTEAAIEIANGSVSNLRPVAGTDGRVWTATFTPTANLARTSVDRIEVRLDGITD CCCCCCCEEEEEEECCCCHHCCCCCCCCCCEEEEEEECCCCHHHHCCCEEEEEEECCHHH RIGNNSFGTNARDIPAIVIDTKVFVVNNATVNGKQLVLQYSDETRLDPDQTHNAPNDAFV HCCCCCCCCCCCCCCEEEEEEEEEEEECCEECCEEEEEEECCCCCCCCHHCCCCCCCEEE VLVDGVRNSVTGVLVDAAAKTVTLTLERAVSKGQQVSVAYNDPSTGDDPQAVQEATTGKD EEECCCCCCCEEEEEECCCEEEEEEEHHHHCCCCEEEEEECCCCCCCCHHHHHHHCCCCC AASFAAKPVTNLTPAPPEPDAPDAGAPDSDRDGLSNNREDQAPGLLRPDGSAGLAGDGNG HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC DGVKDSQQVAVASTRDLTLVAGSRDGKLIPDSNARITELVRSDAPANLPKGMEMPLGLTS CCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEE FKVSLAEGRSTESFSLYVDQALGANGYWLKNSAGTWVNLASEPYGGKVSSEGGRTRLDFQ EEEEECCCCCCCEEEEEEEHHCCCCCEEEECCCCCEEEECCCCCCCEECCCCCCEEEEEE IQDGGEYDADGQADGSITAPGAVAKMPLSIVGQAPQVDSHGYWF ECCCCCCCCCCCCCCCEECCCHHHHCCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA