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The map label for this gene is pecT [H]

Identifier: 121611054

GI number: 121611054

Start: 4536742

End: 4537620

Strand: Direct

Name: pecT [H]

Synonym: Veis_4138

Alternate gene names: 121611054

Gene position: 4536742-4537620 (Clockwise)

Preceding gene: 121611049

Following gene: 121611055

Centisome position: 81.5

GC content: 69.4

Gene sequence:

>879_bases
ATGCCCACGCTCGATCTCGAACTGCTGCGCTCGTTCGCGGCCGTCGTCAGCCACCACAGCTTTGCGGCGGCCGCCGTCCA
CCTGGGGCGCACGCAGTCGGCGATCACGCAGCAGATGCAGCGGCTGCAAGAGCAGATCGGGCATCCGCTCTTCGTCAAGC
AAGGCCGCCAGAAGCGGCTGACCGAGCGCGGCGAACGGCTGCTCAACTATGCGCGGCACATGCTCGCGCTCAACGACGAG
GCGCTGCGCAACCTCCGGCAGGGCCGGTTCGAAGGCAACCTGCGCATCGGCGCGCCGCACGATGTGGCCGAGACCCTGCT
GCCGTCGTTGCTGGCCGAGGTGGCGCGCACTGCGCCGCTGCTGCAGTTGGACATCCACATCGGCCGCAGCCCCTACCTGA
TGACTTCGCTCGAAAGCGGCGAGGTCGACATGATCATCTCCAACCGCGCCGATCCGCAGTCGCAGTTCGAGGGCGTGGTG
CTGCGCAACTCGCCCACCGTCTGGCTGTGCGCGGCCAGCTATGTGCACGACCCGGCGAAGCCGGTGCCGCTGATCATGGC
GGACGGGCCGAGCATCTTCCGGCGCATCGGGCACGAGGCGCTCGACGCGGCGGGCGTGGCGTGGACGCCGCGGTACATGT
CGTCGGGCCTGGTCGGCATCAAGGCGGCGCTCAGGGCGGGCCTGGGCGTGACGGCGCGCGGTGTCGAGCAGTTGGATGCG
GGGCTGAGGGTGCTGGACGCGAGCGACGGCATGCCCCGGCTGCCCGACCTGACGTACTACCTGTATGTGCGCAGCCGCGT
GGTGAACCCGGTCACACGGCAGGTGTTCGAGACGCTCAAGCAACACCTGCGGCTGCCACGGACCGACATGCCGGCCTGA

Upstream 100 bases:

>100_bases
TCTCCAGTGGGGTTGCCTGTGGGGTGTGCCTTCACTGTAGTGCCGGCGGCGTGGCGCAACCATTCAGGCGGCAGAAGAAA
CACATCAATAAAATTGATGT

Downstream 100 bases:

>100_bases
AGCAGGGCGCTGTGGTTCATGCCTGAATCAGGACCGGCCATCACCTCGAACGCTCGGCCTCGTTGGGCGCAATGCAGCGC
TCACGCAACATGGCATCGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MPTLDLELLRSFAAVVSHHSFAAAAVHLGRTQSAITQQMQRLQEQIGHPLFVKQGRQKRLTERGERLLNYARHMLALNDE
ALRNLRQGRFEGNLRIGAPHDVAETLLPSLLAEVARTAPLLQLDIHIGRSPYLMTSLESGEVDMIISNRADPQSQFEGVV
LRNSPTVWLCAASYVHDPAKPVPLIMADGPSIFRRIGHEALDAAGVAWTPRYMSSGLVGIKAALRAGLGVTARGVEQLDA
GLRVLDASDGMPRLPDLTYYLYVRSRVVNPVTRQVFETLKQHLRLPRTDMPA

Sequences:

>Translated_292_residues
MPTLDLELLRSFAAVVSHHSFAAAAVHLGRTQSAITQQMQRLQEQIGHPLFVKQGRQKRLTERGERLLNYARHMLALNDE
ALRNLRQGRFEGNLRIGAPHDVAETLLPSLLAEVARTAPLLQLDIHIGRSPYLMTSLESGEVDMIISNRADPQSQFEGVV
LRNSPTVWLCAASYVHDPAKPVPLIMADGPSIFRRIGHEALDAAGVAWTPRYMSSGLVGIKAALRAGLGVTARGVEQLDA
GLRVLDASDGMPRLPDLTYYLYVRSRVVNPVTRQVFETLKQHLRLPRTDMPA
>Mature_291_residues
PTLDLELLRSFAAVVSHHSFAAAAVHLGRTQSAITQQMQRLQEQIGHPLFVKQGRQKRLTERGERLLNYARHMLALNDEA
LRNLRQGRFEGNLRIGAPHDVAETLLPSLLAEVARTAPLLQLDIHIGRSPYLMTSLESGEVDMIISNRADPQSQFEGVVL
RNSPTVWLCAASYVHDPAKPVPLIMADGPSIFRRIGHEALDAAGVAWTPRYMSSGLVGIKAALRAGLGVTARGVEQLDAG
LRVLDASDGMPRLPDLTYYLYVRSRVVNPVTRQVFETLKQHLRLPRTDMPA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=280, Percent_Identity=43.2142857142857, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1787806, Length=140, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=167, Percent_Identity=26.9461077844311, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48994962, Length=180, Percent_Identity=27.2222222222222, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=152, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=208, Percent_Identity=27.8846153846154, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32313; Mature: 32182

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTLDLELLRSFAAVVSHHSFAAAAVHLGRTQSAITQQMQRLQEQIGHPLFVKQGRQKRL
CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHH
TERGERLLNYARHMLALNDEALRNLRQGRFEGNLRIGAPHDVAETLLPSLLAEVARTAPL
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCE
LQLDIHIGRSPYLMTSLESGEVDMIISNRADPQSQFEGVVLRNSPTVWLCAASYVHDPAK
EEEEEEECCCCEEEEECCCCCEEEEECCCCCCHHHHCCEEEECCCCEEEEEHHHHCCCCC
PVPLIMADGPSIFRRIGHEALDAAGVAWTPRYMSSGLVGIKAALRAGLGVTARGVEQLDA
CCCEEEECCHHHHHHHCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHC
GLRVLDASDGMPRLPDLTYYLYVRSRVVNPVTRQVFETLKQHLRLPRTDMPA
CCEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PTLDLELLRSFAAVVSHHSFAAAAVHLGRTQSAITQQMQRLQEQIGHPLFVKQGRQKRL
CCCHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHH
TERGERLLNYARHMLALNDEALRNLRQGRFEGNLRIGAPHDVAETLLPSLLAEVARTAPL
HHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCE
LQLDIHIGRSPYLMTSLESGEVDMIISNRADPQSQFEGVVLRNSPTVWLCAASYVHDPAK
EEEEEEECCCCEEEEECCCCCEEEEECCCCCCHHHHCCEEEECCCCEEEEEHHHHCCCCC
PVPLIMADGPSIFRRIGHEALDAAGVAWTPRYMSSGLVGIKAALRAGLGVTARGVEQLDA
CCCEEEECCHHHHHHHCHHHHHHCCCCCCHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHC
GLRVLDASDGMPRLPDLTYYLYVRSRVVNPVTRQVFETLKQHLRLPRTDMPA
CCEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]