| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is prpL [H]
Identifier: 121610985
GI number: 121610985
Start: 4461831
End: 4463747
Strand: Direct
Name: prpL [H]
Synonym: Veis_4069
Alternate gene names: 121610985
Gene position: 4461831-4463747 (Clockwise)
Preceding gene: 121610984
Following gene: 121610986
Centisome position: 80.15
GC content: 64.06
Gene sequence:
>1917_bases ATGAAAAATCCCGGGTTTGTGGCCCGCATGGGCATGCTGGGCGCCTTGGCGACCGTCCTCCTGTCTGGCTGTGGCGGCGC GGGCCAGGACGGCGCCCCATCGGCCGCCCAGACCCCGTCGGTAGCGAAGGTGGAGCAGGTGGACGGCCGGGTGCAGCCCG CCAGCGCCGACCAGGGTGTGCCGCATGTCAAGTCGCGCCATGTGGGCGCAATCCCGATTCCGTCCCGGATCCGTCTGGGC GCGTTGAAGCAGGAGGAAATCCGGTCCGCCGTCTCTGACGCAAGCCCCCGCAAATTGGTCGGCCTGGCCCGCGCCGTGGA CGCCGCGCCGACCTTGCAGCAACTGCAATGGCAGCCTGTGGCCGGCGGCGGCCAGGTCGCCGCCATCAGCGTTTCTGCCG AAGGCGCCCATGGCCTGCGGCTGGGGATCGTCGTGCGGCAGTTGCCCGGCAGTGCCGTGCTGCGCCTGTATCGCCAGGCC GCGCCCGCCACGGTGTTCCAGATCTCGGGCCAGGAGGTGCTGCAGCGCATCGAGAGCAACGCGCTGGCCGGCGACCGCAG CCTCGACGGCCAGACCTGGTGGACGCCGGATCTGGGCGCCGACGAGGTCACGCTGGAGTTGGAACTGCCCGCAGGCGCCG ACGTGGCTGCGCTCGACATGGCGCTGACCCGCGTATCGCATATCTTCGAGAACCTGGCCCTGCCCACGCAGGAGGAGTTC GAGACCAAGATCAACGATGCCATGCCATGCAACCGGGACGCCAGTTGCGAGAATGACTATGCCGACCAGCGCAACGCCGT GGCACGCACGAGCTTCGTATCGCGGGGCGATGCCTATACGTGCACCGGCACCTTGCTCAACGACAGCCAATCTTCGGGGA CACCGTATTTCCTGAGCGCCCACCACTGCATTTCGTCGCAGGCCGAGGCGGACACGCTGGAGACGAACTGGTTCTACCGC TCGTCCTCATGCCGCAGCCGCACGCTGTCGAGCCGCTCTGTCCACCGCCGGGGCGGCGCCAAGCTGCTGTATTCCTCGGC CAGCACCGACACCGCGCTGCTCCAGCTCAATGACGCACCGCCCGAAGGGGCCTTCTTTGCCGGCTGGGATGCCAGCGCCC AGGCCAAGTATTCTTCGGTGGCGACGCTGCACCACCCGGCTGGCGACATGCTGAAGATCAGTTTGGGCCGTTTGGGAGAG CAGACCACCTGCACCGCGATGAGCCAGTCAGGGTCGTTCGACTGCGAAGGAAAGACGGGCAACTATTACGAGGTGTACTG GTACCGGGGAACGACCGAGTACGGAAGCAGCGGCGCGGCCCTGCTCAATAGCGCCAAAAAGGTGATCGGCACCTTGTACG GCGGCACCTCCAGTTGTTTCAACATGTCTGCGAAAGAGATCTTTGGCCGGTTCGACGTGGCCTATGAGGCCGGACTGAAA AAATGGCTGGCAGCAGCGCCGGCCGACGCATCGAACCAGCGCGTTGCAGTCCATCGCTTCTACAACAACAGAGCAGGCTC GCATTTCTTCACCACCAATGTGGCCGAGCGGGACTACGTGATCCAGAGATTGTCCGACTTTGCGTATGAAGGGGTGGCCT TTTACGCACAAGCACAGGCTCAGCCGGGCAGCATCCCCATGTACCGTTTCTATGGCGCGGACAGTGGCGCCCATTTCTTC ACGGCCAGCGCGCAAGAGCGCGACGATGTGAAAAACAATATGCCGCAATACCGCTACGAGGGCATTGCATGGTACGCATC GCCTGACCACAGCGCCAACACATCACCGGTATTCCGCTTCTCCTACAAGCAGGTACCCTTCTACACCATCAACCAGGCCG AGCGGGACTTCATCATCGCCCACTATCGTGAGTACACCTACGAGGGCCCCAACTACTACGCGTGGACCAATCCATAA
Upstream 100 bases:
>100_bases CAAGGCCTTGACGAAGTAGCATCCGGACGCTTGCGTGCCGTCTTGTCACATGCTTGGCACACTGCGAACATCCAACCACC TTACTGAGTGAGGACGAGAA
Downstream 100 bases:
>100_bases GCCCTGCGATGACCCTGCAAACCGACGACTTCGCCCCTGCTCCCGCCCGGCGCGTTGTCTCTGCGGCGCCCGCTTCGCCC CAGGAGCAGGCGATCGAGCG
Product: peptidase S1 and S6, chymotrypsin/Hap
Products: NA
Alternate protein names: Protease IV; pvdS-regulated endoprotease [H]
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MKNPGFVARMGMLGALATVLLSGCGGAGQDGAPSAAQTPSVAKVEQVDGRVQPASADQGVPHVKSRHVGAIPIPSRIRLG ALKQEEIRSAVSDASPRKLVGLARAVDAAPTLQQLQWQPVAGGGQVAAISVSAEGAHGLRLGIVVRQLPGSAVLRLYRQA APATVFQISGQEVLQRIESNALAGDRSLDGQTWWTPDLGADEVTLELELPAGADVAALDMALTRVSHIFENLALPTQEEF ETKINDAMPCNRDASCENDYADQRNAVARTSFVSRGDAYTCTGTLLNDSQSSGTPYFLSAHHCISSQAEADTLETNWFYR SSSCRSRTLSSRSVHRRGGAKLLYSSASTDTALLQLNDAPPEGAFFAGWDASAQAKYSSVATLHHPAGDMLKISLGRLGE QTTCTAMSQSGSFDCEGKTGNYYEVYWYRGTTEYGSSGAALLNSAKKVIGTLYGGTSSCFNMSAKEIFGRFDVAYEAGLK KWLAAAPADASNQRVAVHRFYNNRAGSHFFTTNVAERDYVIQRLSDFAYEGVAFYAQAQAQPGSIPMYRFYGADSGAHFF TASAQERDDVKNNMPQYRYEGIAWYASPDHSANTSPVFRFSYKQVPFYTINQAERDFIIAHYREYTYEGPNYYAWTNP
Sequences:
>Translated_638_residues MKNPGFVARMGMLGALATVLLSGCGGAGQDGAPSAAQTPSVAKVEQVDGRVQPASADQGVPHVKSRHVGAIPIPSRIRLG ALKQEEIRSAVSDASPRKLVGLARAVDAAPTLQQLQWQPVAGGGQVAAISVSAEGAHGLRLGIVVRQLPGSAVLRLYRQA APATVFQISGQEVLQRIESNALAGDRSLDGQTWWTPDLGADEVTLELELPAGADVAALDMALTRVSHIFENLALPTQEEF ETKINDAMPCNRDASCENDYADQRNAVARTSFVSRGDAYTCTGTLLNDSQSSGTPYFLSAHHCISSQAEADTLETNWFYR SSSCRSRTLSSRSVHRRGGAKLLYSSASTDTALLQLNDAPPEGAFFAGWDASAQAKYSSVATLHHPAGDMLKISLGRLGE QTTCTAMSQSGSFDCEGKTGNYYEVYWYRGTTEYGSSGAALLNSAKKVIGTLYGGTSSCFNMSAKEIFGRFDVAYEAGLK KWLAAAPADASNQRVAVHRFYNNRAGSHFFTTNVAERDYVIQRLSDFAYEGVAFYAQAQAQPGSIPMYRFYGADSGAHFF TASAQERDDVKNNMPQYRYEGIAWYASPDHSANTSPVFRFSYKQVPFYTINQAERDFIIAHYREYTYEGPNYYAWTNP >Mature_638_residues MKNPGFVARMGMLGALATVLLSGCGGAGQDGAPSAAQTPSVAKVEQVDGRVQPASADQGVPHVKSRHVGAIPIPSRIRLG ALKQEEIRSAVSDASPRKLVGLARAVDAAPTLQQLQWQPVAGGGQVAAISVSAEGAHGLRLGIVVRQLPGSAVLRLYRQA APATVFQISGQEVLQRIESNALAGDRSLDGQTWWTPDLGADEVTLELELPAGADVAALDMALTRVSHIFENLALPTQEEF ETKINDAMPCNRDASCENDYADQRNAVARTSFVSRGDAYTCTGTLLNDSQSSGTPYFLSAHHCISSQAEADTLETNWFYR SSSCRSRTLSSRSVHRRGGAKLLYSSASTDTALLQLNDAPPEGAFFAGWDASAQAKYSSVATLHHPAGDMLKISLGRLGE QTTCTAMSQSGSFDCEGKTGNYYEVYWYRGTTEYGSSGAALLNSAKKVIGTLYGGTSSCFNMSAKEIFGRFDVAYEAGLK KWLAAAPADASNQRVAVHRFYNNRAGSHFFTTNVAERDYVIQRLSDFAYEGVAFYAQAQAQPGSIPMYRFYGADSGAHFF TASAQERDDVKNNMPQYRYEGIAWYASPDHSANTSPVFRFSYKQVPFYTINQAERDFIIAHYREYTYEGPNYYAWTNP
Specific function: Lysine-specific endoprotease. Involved in corneal virulence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009003 [H]
Pfam domain/function: NA
EC number: =3.4.21.50 [H]
Molecular weight: Translated: 69115; Mature: 69115
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNPGFVARMGMLGALATVLLSGCGGAGQDGAPSAAQTPSVAKVEQVDGRVQPASADQGV CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC PHVKSRHVGAIPIPSRIRLGALKQEEIRSAVSDASPRKLVGLARAVDAAPTLQQLQWQPV CCHHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHCEEEEC AGGGQVAAISVSAEGAHGLRLGIVVRQLPGSAVLRLYRQAAPATVFQISGQEVLQRIESN CCCCEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHC ALAGDRSLDGQTWWTPDLGADEVTLELELPAGADVAALDMALTRVSHIFENLALPTQEEF CCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH ETKINDAMPCNRDASCENDYADQRNAVARTSFVSRGDAYTCTGTLLNDSQSSGTPYFLSA HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEH HHCISSQAEADTLETNWFYRSSSCRSRTLSSRSVHRRGGAKLLYSSASTDTALLQLNDAP HHHHCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCC PEGAFFAGWDASAQAKYSSVATLHHPAGDMLKISLGRLGEQTTCTAMSQSGSFDCEGKTG CCCCEEECCCCCCCCHHHHEEEEECCCCCEEEEEHHHCCCCCEEEEECCCCCEEECCCCC NYYEVYWYRGTTEYGSSGAALLNSAKKVIGTLYGGTSSCFNMSAKEIFGRFDVAYEAGLK CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHH KWLAAAPADASNQRVAVHRFYNNRAGSHFFTTNVAERDYVIQRLSDFAYEGVAFYAQAQA HHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCC QPGSIPMYRFYGADSGAHFFTASAQERDDVKNNMPQYRYEGIAWYASPDHSANTSPVFRF CCCCCCEEEEECCCCCCEEEEECCHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCEEEE SYKQVPFYTINQAERDFIIAHYREYTYEGPNYYAWTNP EECCCCEEEECCCCCCEEEEEEHHHCCCCCCEEEECCC >Mature Secondary Structure MKNPGFVARMGMLGALATVLLSGCGGAGQDGAPSAAQTPSVAKVEQVDGRVQPASADQGV CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC PHVKSRHVGAIPIPSRIRLGALKQEEIRSAVSDASPRKLVGLARAVDAAPTLQQLQWQPV CCHHCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHCEEEEC AGGGQVAAISVSAEGAHGLRLGIVVRQLPGSAVLRLYRQAAPATVFQISGQEVLQRIESN CCCCEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHHC ALAGDRSLDGQTWWTPDLGADEVTLELELPAGADVAALDMALTRVSHIFENLALPTQEEF CCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH ETKINDAMPCNRDASCENDYADQRNAVARTSFVSRGDAYTCTGTLLNDSQSSGTPYFLSA HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEH HHCISSQAEADTLETNWFYRSSSCRSRTLSSRSVHRRGGAKLLYSSASTDTALLQLNDAP HHHHCCCCCCCEEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCC PEGAFFAGWDASAQAKYSSVATLHHPAGDMLKISLGRLGEQTTCTAMSQSGSFDCEGKTG CCCCEEECCCCCCCCHHHHEEEEECCCCCEEEEEHHHCCCCCEEEEECCCCCEEECCCCC NYYEVYWYRGTTEYGSSGAALLNSAKKVIGTLYGGTSSCFNMSAKEIFGRFDVAYEAGLK CEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHH KWLAAAPADASNQRVAVHRFYNNRAGSHFFTTNVAERDYVIQRLSDFAYEGVAFYAQAQA HHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCEEEEEECCC QPGSIPMYRFYGADSGAHFFTASAQERDDVKNNMPQYRYEGIAWYASPDHSANTSPVFRF CCCCCCEEEEECCCCCCEEEEECCHHHHHHHHCCCCEEECCEEEEECCCCCCCCCCEEEE SYKQVPFYTINQAERDFIIAHYREYTYEGPNYYAWTNP EECCCCEEEECCCCCCEEEEEEHHHCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12419815; 10984043 [H]