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The map label for this gene is soxD [H]

Identifier: 121610963

GI number: 121610963

Start: 4437011

End: 4437364

Strand: Direct

Name: soxD [H]

Synonym: Veis_4047

Alternate gene names: 121610963

Gene position: 4437011-4437364 (Clockwise)

Preceding gene: 121610962

Following gene: 121610964

Centisome position: 79.71

GC content: 66.67

Gene sequence:

>354_bases
ATGTTTTTATTGCATTGCCCCCACTGCGGCGAGTTGCGCGACGAACAAGAGTTCGGCTACGCCGGCGAAGCCTTCATTGC
CCGCCCGGCCCAGCCCGAGGCGGTCGATGACGCCCTCTGGGGCGACTATCTCTTCATGCGCCAGAACCCGAAGGGCTGGT
TCTGGGAGCAGTGGCAGCACACTGCGGCCTGCCGCAAGGTGTTCGTCGTCAAGCGCCACACCGCCAGCTACGAGGTCGCA
GGCAGTTGGACGCTGGCCGAAGGCCAGGCCCTGTGGCTGACGGAAAAGACCCGCGCCCCGGCCCGGGACATGGACCCCCG
GATGCAGATGAACCCCCAGGGGGCGGCGGCATGA

Upstream 100 bases:

>100_bases
ATGGCCGTCCGCCCCCGCTGGCCCAAGCCTTCGCGCTGGAGCGCTTCGCCTCCGGCCACCTGATCGACGAGCACGGCGCC
GCCGGCGTCGCCCACTGAAT

Downstream 100 bases:

>100_bases
GCGGCACCAGGGTCAGGCAGCCGGCCGCCCGCATCGACGGCTCGCGCCAGTTGCGCTTTAGCTTCAACGGCCGCGACTAC
ACCGGCCACCCCGGCGACAC

Product: sarcosine oxidase subunit delta

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MFLLHCPHCGELRDEQEFGYAGEAFIARPAQPEAVDDALWGDYLFMRQNPKGWFWEQWQHTAACRKVFVVKRHTASYEVA
GSWTLAEGQALWLTEKTRAPARDMDPRMQMNPQGAAA

Sequences:

>Translated_117_residues
MFLLHCPHCGELRDEQEFGYAGEAFIARPAQPEAVDDALWGDYLFMRQNPKGWFWEQWQHTAACRKVFVVKRHTASYEVA
GSWTLAEGQALWLTEKTRAPARDMDPRMQMNPQGAAA
>Mature_117_residues
MFLLHCPHCGELRDEQEFGYAGEAFIARPAQPEAVDDALWGDYLFMRQNPKGWFWEQWQHTAACRKVFVVKRHTASYEVA
GSWTLAEGQALWLTEKTRAPARDMDPRMQMNPQGAAA

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 13428; Mature: 13428

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLLHCPHCGELRDEQEFGYAGEAFIARPAQPEAVDDALWGDYLFMRQNPKGWFWEQWQH
CEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHCCCCEEEEEECCCCCCHHHHHH
TAACRKVFVVKRHTASYEVAGSWTLAEGQALWLTEKTRAPARDMDPRMQMNPQGAAA
HHHHHEEEEEEECCCCEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MFLLHCPHCGELRDEQEFGYAGEAFIARPAQPEAVDDALWGDYLFMRQNPKGWFWEQWQH
CEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHCCCCEEEEEECCCCCCHHHHHH
TAACRKVFVVKRHTASYEVAGSWTLAEGQALWLTEKTRAPARDMDPRMQMNPQGAAA
HHHHHEEEEEEECCCCEEECCCEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]