| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610606
Identifier: 121610606
GI number: 121610606
Start: 4068510
End: 4069997
Strand: Direct
Name: 121610606
Synonym: Veis_3679
Alternate gene names: NA
Gene position: 4068510-4069997 (Clockwise)
Preceding gene: 121610602
Following gene: 121610607
Centisome position: 73.09
GC content: 66.06
Gene sequence:
>1488_bases ATGCCCGAGCCCACCGACACGGCTGATTTCTTCCGCTCCCGTCTGGCCGAGATGATCGACTTGCGCCACCCGCTGGCGGT GCTGGCGAGCCGTCTTCCCTGGACGCAGATCGAAGCGGCACTGGCACCTTATTTCGCGCGTCGGGTCCGTGCCGGTCGAG TTCTGGAACACGACGATCTCTTCGGCCCTTCGCTCCAGGTCGCGGGCGCCGGTGTCGCCGCCGCGGGCCGCCCGCGTCTT CCCCTGCGCCTCATGGCCAGCCTGCTGTATCTGAAGCACGTCTACAAGCTCAGCGACGAGGAACTGGTCGAGCGCTGGGC CGAGAACGTGCAGTGGCAGTTCTTCAGCGGCATGACCTTCTACGAGCCACGCCTGCCCTGCGACGCCACCCAGATCGGGC GCTTCCGCTCGATCCTGGGCGAGGCCGGTGTCGAGGAACTCCTGAAGGCCACCATCGACACTGCGGTGGCCTCCAAGGCG ATCAAGCCGGCCGAGTTCGAGCGCGTGATCGTGGATACCACCGTCCAGGAGAAGGCCATCGCCCACCCCGTGGACTCCCG CCTGCTGGAGATCGCCCGCGCCAAGGTGGTGGCTGCCGCCAAGCGCGCGGGCATCGCGCTGAAGCAGACCTTCGCCAAGG AAGGCAAGAACCTGCGCCGCAGGGCTGGCGGCTACGCCCACGCCAAGCAGTTCAAGCGCTTGAAGAAGGTGCTCAAGCGC CAGCGCACGGTACTGGGTATCGTGCTGCGCGAAGTGCAGCGCAAGCTTTGCAAGTTGCCTGCGACATCGGTGCCTGCCGT CGATCGCTTGCGCGCACTGATGGGCCGCGCCGAGCGCATTCGCACCCAGCGCCCGAAGGACAAGAACAAACTCTATGCAT TGCACGCGCCCGAAGTTGAGTGCATCGGCAAGGGGAAGGCGCGCCGGCCTTACGAGTTTGGCGTGAAGGTCAGCGTGGCC GTCACGCACAAGCAGGGGCTGGTGGTGGGTGCGCGCAGCTTCACGGGCAACCCGTATGACGGCCACACGCTGGCCGAGCA ACTCGAGCAGGTCAAGATCCTGACGGAGGACACGGGCGCCAGCCCGAAGCAGGCAGTGGTGGACCTGGGGTTCCGGGGCG TGGACGCAGCCAATCCGGGCATCCAGATCATTCATCGGGGGCGCTTCAAGTCCTTGACCGATGCCCAGCGCCGCTGGCTC AAGCGAAGGCAGGCGGTGGAGCCCACCATCGGACACCTGAAGCACGACAACGGGATGGATCGGTGCTGGCTGCAGGGTGC CACCGGTGACGCGCTGCATGCAGTGCTGTGTGCGGCGGGCTACAACATCCGCTGGCTGCTGCGCGCCATCATGCGCCTCG GGCTCAAGGGCCTTTTATTGCGCCTGATCGCCTTGCTGCGCACGCTCATCGGCGTCCCCCACTTCTTCGCATCCAACGAA ATCACGCCATCACGCGCCGCCGCGCGGTTCGCTGCGATAGCGAAATGA
Upstream 100 bases:
>100_bases CTCTGCGACCCGCATGAATGCTGGATTTTTGGCTCTTTGTGGTCCACCGAATCTCCCAGGATTCGTTGAACAGGCAGCTG ATTCCTGAGAGATTTGCGCA
Downstream 100 bases:
>100_bases ATTTCGCAGGTCCGACTGGATATGGTGCAACACCTGCGCGACGCGAATGCTTGTGGGCGCAGGCCATGAGCGCCAGGACG GTGCATCGATGGCCCATTGC
Product: transposase, IS4 family protein
Products: NA
Alternate protein names: ORFA [H]
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MPEPTDTADFFRSRLAEMIDLRHPLAVLASRLPWTQIEAALAPYFARRVRAGRVLEHDDLFGPSLQVAGAGVAAAGRPRL PLRLMASLLYLKHVYKLSDEELVERWAENVQWQFFSGMTFYEPRLPCDATQIGRFRSILGEAGVEELLKATIDTAVASKA IKPAEFERVIVDTTVQEKAIAHPVDSRLLEIARAKVVAAAKRAGIALKQTFAKEGKNLRRRAGGYAHAKQFKRLKKVLKR QRTVLGIVLREVQRKLCKLPATSVPAVDRLRALMGRAERIRTQRPKDKNKLYALHAPEVECIGKGKARRPYEFGVKVSVA VTHKQGLVVGARSFTGNPYDGHTLAEQLEQVKILTEDTGASPKQAVVDLGFRGVDAANPGIQIIHRGRFKSLTDAQRRWL KRRQAVEPTIGHLKHDNGMDRCWLQGATGDALHAVLCAAGYNIRWLLRAIMRLGLKGLLLRLIALLRTLIGVPHFFASNE ITPSRAAARFAAIAK
Sequences:
>Translated_495_residues MPEPTDTADFFRSRLAEMIDLRHPLAVLASRLPWTQIEAALAPYFARRVRAGRVLEHDDLFGPSLQVAGAGVAAAGRPRL PLRLMASLLYLKHVYKLSDEELVERWAENVQWQFFSGMTFYEPRLPCDATQIGRFRSILGEAGVEELLKATIDTAVASKA IKPAEFERVIVDTTVQEKAIAHPVDSRLLEIARAKVVAAAKRAGIALKQTFAKEGKNLRRRAGGYAHAKQFKRLKKVLKR QRTVLGIVLREVQRKLCKLPATSVPAVDRLRALMGRAERIRTQRPKDKNKLYALHAPEVECIGKGKARRPYEFGVKVSVA VTHKQGLVVGARSFTGNPYDGHTLAEQLEQVKILTEDTGASPKQAVVDLGFRGVDAANPGIQIIHRGRFKSLTDAQRRWL KRRQAVEPTIGHLKHDNGMDRCWLQGATGDALHAVLCAAGYNIRWLLRAIMRLGLKGLLLRLIALLRTLIGVPHFFASNE ITPSRAAARFAAIAK >Mature_494_residues PEPTDTADFFRSRLAEMIDLRHPLAVLASRLPWTQIEAALAPYFARRVRAGRVLEHDDLFGPSLQVAGAGVAAAGRPRLP LRLMASLLYLKHVYKLSDEELVERWAENVQWQFFSGMTFYEPRLPCDATQIGRFRSILGEAGVEELLKATIDTAVASKAI KPAEFERVIVDTTVQEKAIAHPVDSRLLEIARAKVVAAAKRAGIALKQTFAKEGKNLRRRAGGYAHAKQFKRLKKVLKRQ RTVLGIVLREVQRKLCKLPATSVPAVDRLRALMGRAERIRTQRPKDKNKLYALHAPEVECIGKGKARRPYEFGVKVSVAV THKQGLVVGARSFTGNPYDGHTLAEQLEQVKILTEDTGASPKQAVVDLGFRGVDAANPGIQIIHRGRFKSLTDAQRRWLK RRQAVEPTIGHLKHDNGMDRCWLQGATGDALHAVLCAAGYNIRWLLRAIMRLGLKGLLLRLIALLRTLIGVPHFFASNEI TPSRAAARFAAIAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008490 [H]
Pfam domain/function: PF05598 DUF772 [H]
EC number: NA
Molecular weight: Translated: 55048; Mature: 54917
Theoretical pI: Translated: 11.04; Mature: 11.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEPTDTADFFRSRLAEMIDLRHPLAVLASRLPWTQIEAALAPYFARRVRAGRVLEHDDL CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC FGPSLQVAGAGVAAAGRPRLPLRLMASLLYLKHVYKLSDEELVERWAENVQWQFFSGMTF CCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCEE YEPRLPCDATQIGRFRSILGEAGVEELLKATIDTAVASKAIKPAEFERVIVDTTVQEKAI ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH AHPVDSRLLEIARAKVVAAAKRAGIALKQTFAKEGKNLRRRAGGYAHAKQFKRLKKVLKR HCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QRTVLGIVLREVQRKLCKLPATSVPAVDRLRALMGRAERIRTQRPKDKNKLYALHAPEVE HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH CIGKGKARRPYEFGVKVSVAVTHKQGLVVGARSFTGNPYDGHTLAEQLEQVKILTEDTGA CCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC SPKQAVVDLGFRGVDAANPGIQIIHRGRFKSLTDAQRRWLKRRQAVEPTIGHLKHDNGMD CHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC RCWLQGATGDALHAVLCAAGYNIRWLLRAIMRLGLKGLLLRLIALLRTLIGVPHFFASNE CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHCCCC ITPSRAAARFAAIAK CCHHHHHHHHHHHCC >Mature Secondary Structure PEPTDTADFFRSRLAEMIDLRHPLAVLASRLPWTQIEAALAPYFARRVRAGRVLEHDDL CCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC FGPSLQVAGAGVAAAGRPRLPLRLMASLLYLKHVYKLSDEELVERWAENVQWQFFSGMTF CCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEECCCEE YEPRLPCDATQIGRFRSILGEAGVEELLKATIDTAVASKAIKPAEFERVIVDTTVQEKAI ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH AHPVDSRLLEIARAKVVAAAKRAGIALKQTFAKEGKNLRRRAGGYAHAKQFKRLKKVLKR HCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QRTVLGIVLREVQRKLCKLPATSVPAVDRLRALMGRAERIRTQRPKDKNKLYALHAPEVE HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHH CIGKGKARRPYEFGVKVSVAVTHKQGLVVGARSFTGNPYDGHTLAEQLEQVKILTEDTGA CCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCC SPKQAVVDLGFRGVDAANPGIQIIHRGRFKSLTDAQRRWLKRRQAVEPTIGHLKHDNGMD CHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC RCWLQGATGDALHAVLCAAGYNIRWLLRAIMRLGLKGLLLRLIALLRTLIGVPHFFASNE CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHCCCC ITPSRAAARFAAIAK CCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8429568 [H]