Definition Verminephrobacter eiseniae EF01-2 chromosome, complete genome.
Accession NC_008786
Length 5,566,749

Click here to switch to the map view.

The map label for this gene is 121610580

Identifier: 121610580

GI number: 121610580

Start: 4040382

End: 4040897

Strand: Direct

Name: 121610580

Synonym: Veis_3653

Alternate gene names: NA

Gene position: 4040382-4040897 (Clockwise)

Preceding gene: 121610579

Following gene: 121610589

Centisome position: 72.58

GC content: 60.08

Gene sequence:

>516_bases
ATGTCCCCCGGGCCACTTCGCGCCAGAAGGTGGATTTGCCCATGCTCAGCAGCGCTGCGGCCTCTGCGGCCGGGATCAGG
ATTTTTTCGATGCTGCTCATGCTCTGCCTCCTGTGGCGCTGATGCTTGCCCGGTAGCTGATTTGAATGCGGGTGATGATG
GTCTCCGGTGTGCAACCTCGGTGGGTGGCGCAGAACATCGTGATGAATTCGGCGGGGGTGAGGTGCGGGAATCCTTCGCG
CTGGCATTCCCTCCTCCCGTATTCCTGCTCGTCTGTCATGCGGCGCAGTGGCTCTTGGCGCGTGGCGACGACGGTCACGG
GGGTGCCTATCTTTTCGATTTTCTCGCCCGCACCAAGCCCCATGTTCTTGATGACTGGCTGCAAAACATCCCCGGGTTTC
AGGCGCAACCACCCCAGGCGGCGTGTCACGTCCTTGGTTTGATTCCTCACCTGTTCCGTGGTCAGGGCAAAGCTGATGTT
TCTCACGCTGCTTTCCTGCGTTCCTGTGTGATGTAG

Upstream 100 bases:

>100_bases
GCTCATGCAGTGGTGGGCTCAGTGGCTTGCTGCTGCACAAACTTCTTCAGATCCTCGACACGCCAGCGCGTGAGTCCGCC
GATTTTGATCGGTTCGGGCA

Downstream 100 bases:

>100_bases
TTCGCTTGGACCAACAACCGTGCCACCGGTGGGCAGACGCTGTTGCCGCACATGCGTATTTGTGCGGTCTTGGTCAGCGG
TTTGCCATCGGCACGTTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSPGPLRARRWICPCSAALRPLRPGSGFFRCCSCSASCGADACPVADLNAGDDGLRCATSVGGAEHRDEFGGGEVRESFA
LAFPPPVFLLVCHAAQWLLARGDDGHGGAYLFDFLARTKPHVLDDWLQNIPGFQAQPPQAACHVLGLIPHLFRGQGKADV
SHAAFLRSCVM

Sequences:

>Translated_171_residues
MSPGPLRARRWICPCSAALRPLRPGSGFFRCCSCSASCGADACPVADLNAGDDGLRCATSVGGAEHRDEFGGGEVRESFA
LAFPPPVFLLVCHAAQWLLARGDDGHGGAYLFDFLARTKPHVLDDWLQNIPGFQAQPPQAACHVLGLIPHLFRGQGKADV
SHAAFLRSCVM
>Mature_170_residues
SPGPLRARRWICPCSAALRPLRPGSGFFRCCSCSASCGADACPVADLNAGDDGLRCATSVGGAEHRDEFGGGEVRESFAL
AFPPPVFLLVCHAAQWLLARGDDGHGGAYLFDFLARTKPHVLDDWLQNIPGFQAQPPQAACHVLGLIPHLFRGQGKADVS
HAAFLRSCVM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18202; Mature: 18071

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPGPLRARRWICPCSAALRPLRPGSGFFRCCSCSASCGADACPVADLNAGDDGLRCATS
CCCCCCCHHHCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VGGAEHRDEFGGGEVRESFALAFPPPVFLLVCHAAQWLLARGDDGHGGAYLFDFLARTKP
CCCCHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
HVLDDWLQNIPGFQAQPPQAACHVLGLIPHLFRGQGKADVSHAAFLRSCVM
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
SPGPLRARRWICPCSAALRPLRPGSGFFRCCSCSASCGADACPVADLNAGDDGLRCATS
CCCCCCHHHCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VGGAEHRDEFGGGEVRESFALAFPPPVFLLVCHAAQWLLARGDDGHGGAYLFDFLARTKP
CCCCHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
HVLDDWLQNIPGFQAQPPQAACHVLGLIPHLFRGQGKADVSHAAFLRSCVM
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA