| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610458
Identifier: 121610458
GI number: 121610458
Start: 3897533
End: 3898336
Strand: Direct
Name: 121610458
Synonym: Veis_3528
Alternate gene names: NA
Gene position: 3897533-3898336 (Clockwise)
Preceding gene: 121610457
Following gene: 121610459
Centisome position: 70.01
GC content: 72.89
Gene sequence:
>804_bases ATGGTCCACCCTGCCCGCCCTGCCCCCGGCCCCGCGTCCCGCCCGATGTGGGGCTGGGCGCTGGCCGGCGCCTGCGCCGG CGTGCTGCCTGCCCTGCTGGTTTTTGCCCCCGCGCATTGGCTGGCCGACAGCGTCGCCCATGCCAGCAGCGGGCAGTTAT TGCTGCTCCAGCCGCGCGGCACGGTGTGGAACGGCTCCGCGCAACTGGTGCTGGCCGGCGGCAGCGCCAGCCAAGACCGC GCCGCGCTGCCCGGCACGGTGACCTGGCAATTGCGCCCCCGTTTCAATGGCCTGCGCGCCAGGCTGCATGCCAGTTGCTG CACCCCCGAGCCGTTGCAGGCCCGGGTCGATGCCGGCTGGAGCGGCATACGGCTGCGCGTGGCCGATGGCCAAAGCCAAT GGCCCGCCGCACTGCTGGCCGGGCTGGGCACCCCGTGGAACACCTTGCAGCCCCAGGGCCAGCTCGCGCTGCAAACCCGG GCGCTGGAAATGCGCTGGACGGCCGGCCGCATGCAGCTATCGGGCCAGGCCCGGCTCGATGCGCTGGCCATGTCCACGCG CCTGTCCACGCTGCGCCCGATGGGCAGCTACCGGCTGGTGCTGCAAGGGGGCGAGGTGCCCGCCGTCACCCTGAGCACGC TCGACGGCGCCTTGCAACTGAGCGGCAGCGGCCACTGGGTGGGCCAGCGCCTGCGCTTTGCCGGCCAGGCCAGTGCCAGC CCCGAACGCGCAGCGGCGCTGTCCAACCTCTTGAACATCATCGGACGGCGCAGCGGCGCACGCTCCATCATCACCGTGGG TTGA
Upstream 100 bases:
>100_bases CCTGGTGCTGGTACTGCCTGCGCCCGCCCCTTGATGCGCCGGCCCGGCCCCAAGCCCGTTCCAATCCATCCCAACCCATT CCACCCATTCCCATCGCCCC
Downstream 100 bases:
>100_bases ACCTATGACTTGCCTGCTTTCGCCCCGCCTCCACTCAGCCATCAAAACGGTCGCTGTCAGTGCATTGTTTGCCTGCGCCA GCGGCCAGATGTCGGCCCAA
Product: putative general secretory pathway N transmembrane protein
Products: NA
Alternate protein names: General Secretory Pathway Protein N; Type II Secretion System Protein N; General Secretion Pathway Protein N
Number of amino acids: Translated: 267; Mature: 267
Protein sequence:
>267_residues MVHPARPAPGPASRPMWGWALAGACAGVLPALLVFAPAHWLADSVAHASSGQLLLLQPRGTVWNGSAQLVLAGGSASQDR AALPGTVTWQLRPRFNGLRARLHASCCTPEPLQARVDAGWSGIRLRVADGQSQWPAALLAGLGTPWNTLQPQGQLALQTR ALEMRWTAGRMQLSGQARLDALAMSTRLSTLRPMGSYRLVLQGGEVPAVTLSTLDGALQLSGSGHWVGQRLRFAGQASAS PERAAALSNLLNIIGRRSGARSIITVG
Sequences:
>Translated_267_residues MVHPARPAPGPASRPMWGWALAGACAGVLPALLVFAPAHWLADSVAHASSGQLLLLQPRGTVWNGSAQLVLAGGSASQDR AALPGTVTWQLRPRFNGLRARLHASCCTPEPLQARVDAGWSGIRLRVADGQSQWPAALLAGLGTPWNTLQPQGQLALQTR ALEMRWTAGRMQLSGQARLDALAMSTRLSTLRPMGSYRLVLQGGEVPAVTLSTLDGALQLSGSGHWVGQRLRFAGQASAS PERAAALSNLLNIIGRRSGARSIITVG >Mature_267_residues MVHPARPAPGPASRPMWGWALAGACAGVLPALLVFAPAHWLADSVAHASSGQLLLLQPRGTVWNGSAQLVLAGGSASQDR AALPGTVTWQLRPRFNGLRARLHASCCTPEPLQARVDAGWSGIRLRVADGQSQWPAALLAGLGTPWNTLQPQGQLALQTR ALEMRWTAGRMQLSGQARLDALAMSTRLSTLRPMGSYRLVLQGGEVPAVTLSTLDGALQLSGSGHWVGQRLRFAGQASAS PERAAALSNLLNIIGRRSGARSIITVG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28071; Mature: 28071
Theoretical pI: Translated: 12.28; Mature: 12.28
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVHPARPAPGPASRPMWGWALAGACAGVLPALLVFAPAHWLADSVAHASSGQLLLLQPRG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC TVWNGSAQLVLAGGSASQDRAALPGTVTWQLRPRFNGLRARLHASCCTPEPLQARVDAGW CEECCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHEECCCCCCCCHHHHCCCCC SGIRLRVADGQSQWPAALLAGLGTPWNTLQPQGQLALQTRALEMRWTAGRMQLSGQARLD CEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEECCCHHHH ALAMSTRLSTLRPMGSYRLVLQGGEVPAVTLSTLDGALQLSGSGHWVGQRLRFAGQASAS HHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCHHHHHHCCCCCCCC PERAAALSNLLNIIGRRSGARSIITVG HHHHHHHHHHHHHHHCCCCCCEEEEEC >Mature Secondary Structure MVHPARPAPGPASRPMWGWALAGACAGVLPALLVFAPAHWLADSVAHASSGQLLLLQPRG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC TVWNGSAQLVLAGGSASQDRAALPGTVTWQLRPRFNGLRARLHASCCTPEPLQARVDAGW CEECCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHEECCCCCCCCHHHHCCCCC SGIRLRVADGQSQWPAALLAGLGTPWNTLQPQGQLALQTRALEMRWTAGRMQLSGQARLD CEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEECCCHHHH ALAMSTRLSTLRPMGSYRLVLQGGEVPAVTLSTLDGALQLSGSGHWVGQRLRFAGQASAS HHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCHHHHHHCCCCCCCC PERAAALSNLLNIIGRRSGARSIITVG HHHHHHHHHHHHHHHCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA