| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609772
Identifier: 121609772
GI number: 121609772
Start: 3171329
End: 3172378
Strand: Direct
Name: 121609772
Synonym: Veis_2823
Alternate gene names: NA
Gene position: 3171329-3172378 (Clockwise)
Preceding gene: 121609771
Following gene: 121609773
Centisome position: 56.97
GC content: 63.14
Gene sequence:
>1050_bases ATGATGCTGCCGGCCTGCCCCATCCGACGCTCGGGTCAGCCAAGCCCGCAGCATGGCATGACGCTGATCGAACTGATGGT GGCCATGGCGCTGGGCCTGCTGATCGTGCTGGCCGCCGCCGCGTCCTTGCTGTTTGCGCGTGAAGGTTTCACCGCCGTCG ATGCCGCATCGCAATTGCGCGACAACGGCCGCTTCCTGCAAAACCTGGTGCTGCGCCTGGGAGCGCAAACAGGCTACAAA AACCTGCGCTTTGCCACCGAAACCAAACGACTGGGCGCCGCGCCCGGCAACGCCCTGGCGCCGCCCGACATCTTTGGCGT GAACAACGCCAAGCGCGGAACCCAGAGCGAGTGGGACAGTGGCACTGAGCGCCAATCAGGCGAAGTCGGTTATGGCAGTG ACATTCTGGTGCTGCGCTACCAAACCAGTTCAGCGACTGCCGACAGCGCAACCTCTGACAAAACGATGATCGACTGCGCC GGCGTCGCCGCAACCAACGCACCGACAGAGCCGGGCGACAAACTGGTGAGCATTCTTTATGTGAAGGAGGACAGCGCCGG TGCAGAGCCAGCCCTCATGTGCGCGCGCTCCGAGACCGGGGCCGCCCCCTACGATGCCCAGCCCATCATCTCGGGGGTGG AAAACTTCCAGGTGCTCTATGGCGTCGATGGTATCGGCCCTGCCAACACCGCAGTTCCCGGCACGACAGACAGGGTTGCT GACCGCTATCTGCGCGCGGACCAGTTGACAGTGTCCGACGGTCAGCCGGCCTCTATCAATAAGGCGGCCACTTACGCCAA CTGGCGCCGGGTGCGCAGCATCCGCATTGGCGTCGTGCTTCGGGGGCCACCCGGTTCGGCCAAGCCGGACGGTGGCAATC AAACCTTTTATCCCCTCGGAATCACAAAAGACTCCGCTTCAGGAACCGAAGGCGCGGCTTTTTCCAGCAGCAATGACCCG GGCAGCAGATACACCCCCCCGTTTGATGGCCGCCTGCGCCAGACCCTGACTTTCACCGTGCATCTGCGCAACGCCCAGGA TGAAAACTGA
Upstream 100 bases:
>100_bases TTCCGGTCACCGGCGGGGACCCCGCACCGGCCACCGGCACCACGCCAGCCGCCAGCACACCGGTCGCCAACGCCGCACCA GCCGCCGGCAGGAGCACCAC
Downstream 100 bases:
>100_bases CATGCCCACCTGCAAACCGGGGCTGCGGCCCCTCCCTGCTTCTTCGAGACCGGCGAGACAACGTGGCTTGTCGCTGATCA TCGTCATGCTGATACTGATC
Product: hypothetical protein
Products: NA
Alternate protein names: PilW Type IV Pilus Assembly Protein; Tfp Pilus Assembly Protein PilW
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MMLPACPIRRSGQPSPQHGMTLIELMVAMALGLLIVLAAAASLLFAREGFTAVDAASQLRDNGRFLQNLVLRLGAQTGYK NLRFATETKRLGAAPGNALAPPDIFGVNNAKRGTQSEWDSGTERQSGEVGYGSDILVLRYQTSSATADSATSDKTMIDCA GVAATNAPTEPGDKLVSILYVKEDSAGAEPALMCARSETGAAPYDAQPIISGVENFQVLYGVDGIGPANTAVPGTTDRVA DRYLRADQLTVSDGQPASINKAATYANWRRVRSIRIGVVLRGPPGSAKPDGGNQTFYPLGITKDSASGTEGAAFSSSNDP GSRYTPPFDGRLRQTLTFTVHLRNAQDEN
Sequences:
>Translated_349_residues MMLPACPIRRSGQPSPQHGMTLIELMVAMALGLLIVLAAAASLLFAREGFTAVDAASQLRDNGRFLQNLVLRLGAQTGYK NLRFATETKRLGAAPGNALAPPDIFGVNNAKRGTQSEWDSGTERQSGEVGYGSDILVLRYQTSSATADSATSDKTMIDCA GVAATNAPTEPGDKLVSILYVKEDSAGAEPALMCARSETGAAPYDAQPIISGVENFQVLYGVDGIGPANTAVPGTTDRVA DRYLRADQLTVSDGQPASINKAATYANWRRVRSIRIGVVLRGPPGSAKPDGGNQTFYPLGITKDSASGTEGAAFSSSNDP GSRYTPPFDGRLRQTLTFTVHLRNAQDEN >Mature_349_residues MMLPACPIRRSGQPSPQHGMTLIELMVAMALGLLIVLAAAASLLFAREGFTAVDAASQLRDNGRFLQNLVLRLGAQTGYK NLRFATETKRLGAAPGNALAPPDIFGVNNAKRGTQSEWDSGTERQSGEVGYGSDILVLRYQTSSATADSATSDKTMIDCA GVAATNAPTEPGDKLVSILYVKEDSAGAEPALMCARSETGAAPYDAQPIISGVENFQVLYGVDGIGPANTAVPGTTDRVA DRYLRADQLTVSDGQPASINKAATYANWRRVRSIRIGVVLRGPPGSAKPDGGNQTFYPLGITKDSASGTEGAAFSSSNDP GSRYTPPFDGRLRQTLTFTVHLRNAQDEN
Specific function: Unknown
COG id: COG4966
COG function: function code NU; Tfp pilus assembly protein PilW
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36814; Mature: 36814
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLPACPIRRSGQPSPQHGMTLIELMVAMALGLLIVLAAAASLLFAREGFTAVDAASQLR CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DNGRFLQNLVLRLGAQTGYKNLRFATETKRLGAAPGNALAPPDIFGVNNAKRGTQSEWDS HHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC GTERQSGEVGYGSDILVLRYQTSSATADSATSDKTMIDCAGVAATNAPTEPGDKLVSILY CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEE VKEDSAGAEPALMCARSETGAAPYDAQPIISGVENFQVLYGVDGIGPANTAVPGTTDRVA EECCCCCCCHHEEEECCCCCCCCCCCCHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHH DRYLRADQLTVSDGQPASINKAATYANWRRVRSIRIGVVLRGPPGSAKPDGGNQTFYPLG HHHHHHCEEEECCCCCCCCCHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCCCEEEEEE ITKDSASGTEGAAFSSSNDPGSRYTPPFDGRLRQTLTFTVHLRNAQDEN ECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCC >Mature Secondary Structure MMLPACPIRRSGQPSPQHGMTLIELMVAMALGLLIVLAAAASLLFAREGFTAVDAASQLR CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DNGRFLQNLVLRLGAQTGYKNLRFATETKRLGAAPGNALAPPDIFGVNNAKRGTQSEWDS HHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCC GTERQSGEVGYGSDILVLRYQTSSATADSATSDKTMIDCAGVAATNAPTEPGDKLVSILY CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEE VKEDSAGAEPALMCARSETGAAPYDAQPIISGVENFQVLYGVDGIGPANTAVPGTTDRVA EECCCCCCCHHEEEECCCCCCCCCCCCHHHHHHHCEEEEEECCCCCCCCCCCCCCHHHHH DRYLRADQLTVSDGQPASINKAATYANWRRVRSIRIGVVLRGPPGSAKPDGGNQTFYPLG HHHHHHCEEEECCCCCCCCCHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCCCEEEEEE ITKDSASGTEGAAFSSSNDPGSRYTPPFDGRLRQTLTFTVHLRNAQDEN ECCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA