| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609691
Identifier: 121609691
GI number: 121609691
Start: 3084249
End: 3084653
Strand: Direct
Name: 121609691
Synonym: Veis_2738
Alternate gene names: NA
Gene position: 3084249-3084653 (Clockwise)
Preceding gene: 121609690
Following gene: 121609692
Centisome position: 55.4
GC content: 64.69
Gene sequence:
>405_bases ATGACCAGACAAGTCTTCAACCCCGAATCCATGTACGACAGCGTCGCCTTCGGCTTCTCGCACATGGTGCAGCACAACGG CTCGCGCACGCTGTACCTGGCAGGCCAGGTCGCGTGGGACCGCAACGGCCAATTGGCAGGCGGCGCCGACGTGGTCGCGC AAACGCGCCAGGTGCTGGCCAACATCAAGCAGGTGCTGGCCGCCGCCGGCGCGACGCCGGCCAATGTGCTGCGCTTGCGC ACCTATGTGGTCAAGCACAGCCCGGAGCAACTGGTGCCGATCTGCAAGGAGATCGTCGATTTCTACGGCGCTGCCTTGCC TGCGGCCAACACCTTCATCGGCGTGCAGGCGCTGGCGCTGCCCGAGTTCCTGATCGAAATCGAAGCCGATGCGGCCTTGG ACTGA
Upstream 100 bases:
>100_bases CTCGACCCGTGGCGCAACATCCTGGAACTGGTCGTGCATGGCCGATGATGTCGTTGCCGGCCCCGGTTTTTTTCCATCCC GCACTGACGCAGCCCACACC
Downstream 100 bases:
>100_bases GCCTGCCGATCGATGCACCGCAACACCGTCGACTGGGCAGGCTACATCCCTGCCATCACCACCCCCTTCACCCGCAGCGG GGCGCTGGACTGGGCGGCGC
Product: endoribonuclease L-PSP
Products: NA
Alternate protein names: Endoribonuclease L-PSP Family Protein; Endoribonuclease; Pyrimidine Utilization Protein C; Translational Inhibitor Protein; Endoribonuclease Family Protein; Translation Initiation Inhibitor; Endoribonuclease Inhibits Protein Synthesis; Translational Inhibitor; YjgF Family Translation Initiation Inhibitor; Exported Endoribonuclease Family Protein
Number of amino acids: Translated: 134; Mature: 133
Protein sequence:
>134_residues MTRQVFNPESMYDSVAFGFSHMVQHNGSRTLYLAGQVAWDRNGQLAGGADVVAQTRQVLANIKQVLAAAGATPANVLRLR TYVVKHSPEQLVPICKEIVDFYGAALPAANTFIGVQALALPEFLIEIEADAALD
Sequences:
>Translated_134_residues MTRQVFNPESMYDSVAFGFSHMVQHNGSRTLYLAGQVAWDRNGQLAGGADVVAQTRQVLANIKQVLAAAGATPANVLRLR TYVVKHSPEQLVPICKEIVDFYGAALPAANTFIGVQALALPEFLIEIEADAALD >Mature_133_residues TRQVFNPESMYDSVAFGFSHMVQHNGSRTLYLAGQVAWDRNGQLAGGADVVAQTRQVLANIKQVLAAAGATPANVLRLRT YVVKHSPEQLVPICKEIVDFYGAALPAANTFIGVQALALPEFLIEIEADAALD
Specific function: Unknown
COG id: COG0251
COG function: function code J; Putative translation initiation inhibitor, yjgF family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14442; Mature: 14310
Theoretical pI: Translated: 5.58; Mature: 5.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQVFNPESMYDSVAFGFSHMVQHNGSRTLYLAGQVAWDRNGQLAGGADVVAQTRQVLA CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHH NIKQVLAAAGATPANVLRLRTYVVKHSPEQLVPICKEIVDFYGAALPAANTFIGVQALAL HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH PEFLIEIEADAALD HHHHHHCCCCCCCC >Mature Secondary Structure TRQVFNPESMYDSVAFGFSHMVQHNGSRTLYLAGQVAWDRNGQLAGGADVVAQTRQVLA CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHH NIKQVLAAAGATPANVLRLRTYVVKHSPEQLVPICKEIVDFYGAALPAANTFIGVQALAL HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH PEFLIEIEADAALD HHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA