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The map label for this gene is rbsC [H]

Identifier: 121609640

GI number: 121609640

Start: 3031440

End: 3032486

Strand: Direct

Name: rbsC [H]

Synonym: Veis_2687

Alternate gene names: 121609640

Gene position: 3031440-3032486 (Clockwise)

Preceding gene: 121609639

Following gene: 121609641

Centisome position: 54.46

GC content: 68.1

Gene sequence:

>1047_bases
ATGAACACGAACCCCTCGCAGGCGCAGGCGGCCGAGGCCTTCGCTTCGTCCGCCTGCGCCCGTGCGCCCGTGCCGGCACG
TTTGTCCGTGCGGGCGCTCGTGCTGCGCTACAACTTCCTGGCCATCTTCCTGTTGGTGGTGCTGGTCGCGACGCAGTTGT
CCGACAACTTCCTGACCTGGCGCAACATCGCCAACCTGTTCCAGCAGGCCTCCATCGTCGGCATCGTGGCGGTGGGCATG
ACCTTCGTGATCCTCACCGCCAACATCGACCTGTCGGTGGGCAGCCTGGTGGCCTTCGGCGGCATGCTGGTGGCGGTCCT
GCTCGTGCAGGGCGTGTCCATTCCGCTGGCCATCGCCGTCACGCTGCTGAGCGGTGTGCTGATCGGCGCAGGCATGGGCG
CGCTGTCGATCTACGCCGAGGTGCCGAGCTTCATCATCACGCTGGCCGGGCTGGTGAGCTTTCGCGGCCTCACGTACCTG
ATCTCCGACGGCACGCCGCTCGGCGGCCTGCCCGAAGCCTTCGGCACCTTCGGCTCGCTGATGATCAACCTGGTGCCGGG
CGCGGACCTGCCGTTCCCCGCGATGGGCCTGGCCTTCATCGGCATCTCGCTGCTGGCGGGGCTGGTGCTGCGCAAGACCG
TGTTCGGCGAGTACGTGCTGGCCTCGGGCGGCAACGCCGAGGCGGCGCGCCTGTCCGGCGTGCCGGTCAAGCCGGTGATC
ACCGCCGTGTTCGCCATCTCGGGCCTGCTGGCCGCGCTGGGCGGCGTGCTGCTCACCACTCGGCTGAACATCGGCCAGCC
CACCGCCGCGCAGGGCCTGGAACTGGACGCGATCGCGGCGGTCGTGCTGGGCGGCACCAGCCTGTTCGGTGGGCGCGGCA
GCGTGCTGGGCACGGCGGTGGCGGTAATGCTGCTGCAGGTGCTGCGCAACATCTTCAACCTGTTGGGCCTGGGCTCCTTC
TATCAGATGACCATCACCGGCGTGATCATCGTTCTTGCCATCCTTCTGAACCGGCTCATTGACCACCACTCCGGTCGCAG
CCACTGA

Upstream 100 bases:

>100_bases
AGATCTGGGTCATGCACGAGGGCCGCAACGTGGCCTGCTTCGATCCGCGAACCACCCGCAGCGAGCAGGTGCTGCAAACC
ACCATCCTGGGTCATCCACC

Downstream 100 bases:

>100_bases
GCTTTTTCTTCACACGCTCCCCAACCCATGACTGCCACCGACCTCCGCAACCCGGGCATCGCACTCGATGCCTCCCTGTT
CGAGCATGCGCGAGTGAACA

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MNTNPSQAQAAEAFASSACARAPVPARLSVRALVLRYNFLAIFLLVVLVATQLSDNFLTWRNIANLFQQASIVGIVAVGM
TFVILTANIDLSVGSLVAFGGMLVAVLLVQGVSIPLAIAVTLLSGVLIGAGMGALSIYAEVPSFIITLAGLVSFRGLTYL
ISDGTPLGGLPEAFGTFGSLMINLVPGADLPFPAMGLAFIGISLLAGLVLRKTVFGEYVLASGGNAEAARLSGVPVKPVI
TAVFAISGLLAALGGVLLTTRLNIGQPTAAQGLELDAIAAVVLGGTSLFGGRGSVLGTAVAVMLLQVLRNIFNLLGLGSF
YQMTITGVIIVLAILLNRLIDHHSGRSH

Sequences:

>Translated_348_residues
MNTNPSQAQAAEAFASSACARAPVPARLSVRALVLRYNFLAIFLLVVLVATQLSDNFLTWRNIANLFQQASIVGIVAVGM
TFVILTANIDLSVGSLVAFGGMLVAVLLVQGVSIPLAIAVTLLSGVLIGAGMGALSIYAEVPSFIITLAGLVSFRGLTYL
ISDGTPLGGLPEAFGTFGSLMINLVPGADLPFPAMGLAFIGISLLAGLVLRKTVFGEYVLASGGNAEAARLSGVPVKPVI
TAVFAISGLLAALGGVLLTTRLNIGQPTAAQGLELDAIAAVVLGGTSLFGGRGSVLGTAVAVMLLQVLRNIFNLLGLGSF
YQMTITGVIIVLAILLNRLIDHHSGRSH
>Mature_348_residues
MNTNPSQAQAAEAFASSACARAPVPARLSVRALVLRYNFLAIFLLVVLVATQLSDNFLTWRNIANLFQQASIVGIVAVGM
TFVILTANIDLSVGSLVAFGGMLVAVLLVQGVSIPLAIAVTLLSGVLIGAGMGALSIYAEVPSFIITLAGLVSFRGLTYL
ISDGTPLGGLPEAFGTFGSLMINLVPGADLPFPAMGLAFIGISLLAGLVLRKTVFGEYVLASGGNAEAARLSGVPVKPVI
TAVFAISGLLAALGGVLLTTRLNIGQPTAAQGLELDAIAAVVLGGTSLFGGRGSVLGTAVAVMLLQVLRNIFNLLGLGSF
YQMTITGVIIVLAILLNRLIDHHSGRSH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=313, Percent_Identity=41.5335463258786, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1788896, Length=332, Percent_Identity=37.3493975903614, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=35.2564102564103, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI87082395, Length=302, Percent_Identity=36.7549668874172, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1790524, Length=313, Percent_Identity=33.8658146964856, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=43.609022556391, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787794, Length=279, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693214, Length=243, Percent_Identity=33.7448559670782, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787793, Length=292, Percent_Identity=31.1643835616438, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788471, Length=295, Percent_Identity=31.5254237288136, Blast_Score=81, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35678; Mature: 35678

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTNPSQAQAAEAFASSACARAPVPARLSVRALVLRYNFLAIFLLVVLVATQLSDNFLTW
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RNIANLFQQASIVGIVAVGMTFVILTANIDLSVGSLVAFGGMLVAVLLVQGVSIPLAIAV
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TLLSGVLIGAGMGALSIYAEVPSFIITLAGLVSFRGLTYLISDGTPLGGLPEAFGTFGSL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH
MINLVPGADLPFPAMGLAFIGISLLAGLVLRKTVFGEYVLASGGNAEAARLSGVPVKPVI
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCCCHHHHH
TAVFAISGLLAALGGVLLTTRLNIGQPTAAQGLELDAIAAVVLGGTSLFGGRGSVLGTAV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
AVMLLQVLRNIFNLLGLGSFYQMTITGVIIVLAILLNRLIDHHSGRSH
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNTNPSQAQAAEAFASSACARAPVPARLSVRALVLRYNFLAIFLLVVLVATQLSDNFLTW
CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RNIANLFQQASIVGIVAVGMTFVILTANIDLSVGSLVAFGGMLVAVLLVQGVSIPLAIAV
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TLLSGVLIGAGMGALSIYAEVPSFIITLAGLVSFRGLTYLISDGTPLGGLPEAFGTFGSL
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH
MINLVPGADLPFPAMGLAFIGISLLAGLVLRKTVFGEYVLASGGNAEAARLSGVPVKPVI
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHCCCCCHHHHH
TAVFAISGLLAALGGVLLTTRLNIGQPTAAQGLELDAIAAVVLGGTSLFGGRGSVLGTAV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
AVMLLQVLRNIFNLLGLGSFYQMTITGVIIVLAILLNRLIDHHSGRSH
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]