| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121609363
Identifier: 121609363
GI number: 121609363
Start: 2721614
End: 2722588
Strand: Direct
Name: 121609363
Synonym: Veis_2406
Alternate gene names: NA
Gene position: 2721614-2722588 (Clockwise)
Preceding gene: 121609360
Following gene: 121609364
Centisome position: 48.89
GC content: 66.15
Gene sequence:
>975_bases GTGAGCAATGCCGTCGCCCCTTTTGCCGTCGCTGCGTGCGTGGCGCTTGCCGCATGGCCCGCCATGGCGCAGGACCACTG GCCCGACAAGCCTGTCAAGCTCGTATTGCCCTACCCGCCGGGTGGCAACGTCGATGGCGCTGCGCGCATCATCGCCGAGC AGTTGCAGGCTGTGTTCATGCAGCCTTTCATCATCGACAACCGGCCCGGTGCCGGCGGCATGATCGCCGGCGCGGCGGTT GCCACGTCCGTGCCTGACGGCTACACCTTCTTCATGGGCGCGAACGGGCCGATCCTGTTCGCGCCAACCGTTTTCAAGCG CAACGTCTACGACTGGAAGAAGGACTTCGCGCCGGTCAGTTCCGTGTCATTCACGCCGCTGGTGTTGCAGGTGCATCCGT CCACGCCATACAAAACCGTGGCAGACCTGTTCGCCGAGGGCAAGAAGCCCGGCAACACGCTGACCATGGCCTCGCCCGGC GCCGGCACGCAAAACCACTTGGTCAGCGAGTATCTGCAGCGCGCAAGCGGTGCCCGCTGGACCACGGTGCACTACAAGGG CAACGCGCCCGCCACCACGGACCTGCTGGGCGGCCAGGTGCAGTTCAACTTCGACCAGATATCGGTGGCCGGCCCCTTCA TCGCGCAGGGCCGCAGCCGCGCGCTGGCCGTGACATCGCCCAAGCGCCTGCCGCAATGGCCCGATGTGCCGACGCTTCAG GAAGCCGGTTTCAAGGACTTCAGCCCCGAGACTTTCACCGGCATCCTGGCGCCGCGCGCCACACCGCCGGCGATCGTTGA GCGCTTGTCGCAGGCGCTGCAGAAAATCCTCGCCGACAAGGCCGTGCAGGCCAGGTTCGAGACGCTTGGCGCGCAGGCCC GCGGCAGTTCACCCGGGCAGTTCACCGAGTTTCTGACGCAGGAAGACGCGCGGTGGATGCCGGTCATCGAGCAAGCCAAC ATCCACGCCGAATGA
Upstream 100 bases:
>100_bases TATTGCTTTGCAGCATTCGATGCGTGCTCCTTAGAGTGGACGGGTCGCCGATCAAACCGCAGCCCATTTGCGGTGCCGGC GCCGGAGCAGGAGAGTCGCT
Downstream 100 bases:
>100_bases ACACCGTCACCACGACCCTCGGGCGCGCCGCGCCCGCCGCGCGCACCAGCGTGTACGTCGCCGGCTTTGGCCACAAGAAC CCGATCCCGGCGGGCTGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSNAVAPFAVAACVALAAWPAMAQDHWPDKPVKLVLPYPPGGNVDGAARIIAEQLQAVFMQPFIIDNRPGAGGMIAGAAV ATSVPDGYTFFMGANGPILFAPTVFKRNVYDWKKDFAPVSSVSFTPLVLQVHPSTPYKTVADLFAEGKKPGNTLTMASPG AGTQNHLVSEYLQRASGARWTTVHYKGNAPATTDLLGGQVQFNFDQISVAGPFIAQGRSRALAVTSPKRLPQWPDVPTLQ EAGFKDFSPETFTGILAPRATPPAIVERLSQALQKILADKAVQARFETLGAQARGSSPGQFTEFLTQEDARWMPVIEQAN IHAE
Sequences:
>Translated_324_residues MSNAVAPFAVAACVALAAWPAMAQDHWPDKPVKLVLPYPPGGNVDGAARIIAEQLQAVFMQPFIIDNRPGAGGMIAGAAV ATSVPDGYTFFMGANGPILFAPTVFKRNVYDWKKDFAPVSSVSFTPLVLQVHPSTPYKTVADLFAEGKKPGNTLTMASPG AGTQNHLVSEYLQRASGARWTTVHYKGNAPATTDLLGGQVQFNFDQISVAGPFIAQGRSRALAVTSPKRLPQWPDVPTLQ EAGFKDFSPETFTGILAPRATPPAIVERLSQALQKILADKAVQARFETLGAQARGSSPGQFTEFLTQEDARWMPVIEQAN IHAE >Mature_323_residues SNAVAPFAVAACVALAAWPAMAQDHWPDKPVKLVLPYPPGGNVDGAARIIAEQLQAVFMQPFIIDNRPGAGGMIAGAAVA TSVPDGYTFFMGANGPILFAPTVFKRNVYDWKKDFAPVSSVSFTPLVLQVHPSTPYKTVADLFAEGKKPGNTLTMASPGA GTQNHLVSEYLQRASGARWTTVHYKGNAPATTDLLGGQVQFNFDQISVAGPFIAQGRSRALAVTSPKRLPQWPDVPTLQE AGFKDFSPETFTGILAPRATPPAIVERLSQALQKILADKAVQARFETLGAQARGSSPGQFTEFLTQEDARWMPVIEQANI HAE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34686; Mature: 34555
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNAVAPFAVAACVALAAWPAMAQDHWPDKPVKLVLPYPPGGNVDGAARIIAEQLQAVFM CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH QPFIIDNRPGAGGMIAGAAVATSVPDGYTFFMGANGPILFAPTVFKRNVYDWKKDFAPVS CCEEEECCCCCCCEEEHHHHHCCCCCCEEEEEECCCCEEECCHHHHCCHHHHHHHCCCCC SVSFTPLVLQVHPSTPYKTVADLFAEGKKPGNTLTMASPGAGTQNHLVSEYLQRASGARW CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE TTVHYKGNAPATTDLLGGQVQFNFDQISVAGPFIAQGRSRALAVTSPKRLPQWPDVPTLQ EEEEEECCCCCHHHHCCCEEEEECCEEEECCCHHHCCCCCEEEEECCCCCCCCCCCCCHH EAGFKDFSPETFTGILAPRATPPAIVERLSQALQKILADKAVQARFETLGAQARGSSPGQ HCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH FTEFLTQEDARWMPVIEQANIHAE HHHHHHHCCCCCCCEEECCCCCCC >Mature Secondary Structure SNAVAPFAVAACVALAAWPAMAQDHWPDKPVKLVLPYPPGGNVDGAARIIAEQLQAVFM CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH QPFIIDNRPGAGGMIAGAAVATSVPDGYTFFMGANGPILFAPTVFKRNVYDWKKDFAPVS CCEEEECCCCCCCEEEHHHHHCCCCCCEEEEEECCCCEEECCHHHHCCHHHHHHHCCCCC SVSFTPLVLQVHPSTPYKTVADLFAEGKKPGNTLTMASPGAGTQNHLVSEYLQRASGARW CCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEE TTVHYKGNAPATTDLLGGQVQFNFDQISVAGPFIAQGRSRALAVTSPKRLPQWPDVPTLQ EEEEEECCCCCHHHHCCCEEEEECCEEEECCCHHHCCCCCEEEEECCCCCCCCCCCCCHH EAGFKDFSPETFTGILAPRATPPAIVERLSQALQKILADKAVQARFETLGAQARGSSPGQ HCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH FTEFLTQEDARWMPVIEQANIHAE HHHHHHHCCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12910271; 9524276 [H]