Definition Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession NC_008752
Length 5,352,772

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The map label for this gene is rbpE [H]

Identifier: 120613408

GI number: 120613408

Start: 5335274

End: 5335804

Strand: Direct

Name: rbpE [H]

Synonym: Aave_4781

Alternate gene names: 120613408

Gene position: 5335274-5335804 (Clockwise)

Preceding gene: 120613407

Following gene: 120613413

Centisome position: 99.67

GC content: 73.07

Gene sequence:

>531_bases
ATGGGCAACAAACTGTACGTCGGCAACCTGCCGTACTCCGTGCGCGACAACGATCTCGAGCAGGCGTTCGGCCAGTTCGG
CGCCGTGACCAGCGCCAAGGTCATGATGGAGCGGGATACCGGCCGTTCCAAGGGCTTCGGCTTCGTCGAGATGGGCAGCG
ATGCCGAGGCGCAGGCCGCCATCAACGGCATGAACGGGCAGGCCCTGGGCGGCCGCAGCATCGTGGTGAACGAAGCACGC
CCCATGGAGCCGCGCCCGCCCCGTAGCGGTGGCGGCTTCGGCGGCGGTGGTGGTGGCGGCTACGGCGGTGGTCGCAGCGG
TGGCGGCTATGGCGGTGGCGGTGGTGGCGGCTATGGTGGCGGCCGTGGCGACGGCGGCGGCGGTTACGGCGGTGGCCGCG
GCGGCGACAGCGGCGGCGGCTATGGCGGCCGCGGCGACGGCGGCTTCCGCAGCCCGTACGGCTCGGGTGCCCGCAATGGC
GGCGGCGGTGGCCGCGGCGGCTACGGCGGCGGCAACAACGGCGGCTATTGA

Upstream 100 bases:

>100_bases
CGGGGATCCGTCAGTTTCGCGCGTAGGGGCTCTTTGTGACCGACCGGCTGCGTTTTCGGGACTCCATCGCTTTTTCCATG
TGTTTTTGAGGAGTCCCGTG

Downstream 100 bases:

>100_bases
GCCCCTTGCCGGCACGCCCCTCTCGCGGGGGTCCATGCCAGCCAGCCACTCCAGGATTTCCCAGGCCCCTTCCAAGGGGC
CTTTTTCTTTTACGGCGGCA

Product: RNP-1-like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MGNKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQALGGRSIVVNEAR
PMEPRPPRSGGGFGGGGGGGYGGGRSGGGYGGGGGGGYGGGRGDGGGGYGGGRGGDSGGGYGGRGDGGFRSPYGSGARNG
GGGGRGGYGGGNNGGY

Sequences:

>Translated_176_residues
MGNKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQALGGRSIVVNEAR
PMEPRPPRSGGGFGGGGGGGYGGGRSGGGYGGGGGGGYGGGRGDGGGGYGGGRGGDSGGGYGGRGDGGFRSPYGSGARNG
GGGGRGGYGGGNNGGY
>Mature_175_residues
GNKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGMNGQALGGRSIVVNEARP
MEPRPPRSGGGFGGGGGGGYGGGRSGGGYGGGGGGGYGGGRGDGGGGYGGGRGGDSGGGYGGRGDGGFRSPYGSGARNGG
GGGRGGYGGGNNGGY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI24762232, Length=83, Percent_Identity=43.3734939759036, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI289547602, Length=80, Percent_Identity=42.5, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI289547741, Length=80, Percent_Identity=43.75, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI71164894, Length=80, Percent_Identity=42.5, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI70780381, Length=80, Percent_Identity=43.75, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI289547743, Length=80, Percent_Identity=43.75, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI289547605, Length=80, Percent_Identity=42.5, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI4502847, Length=76, Percent_Identity=39.4736842105263, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI208431833, Length=81, Percent_Identity=45.679012345679, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4504715, Length=81, Percent_Identity=45.679012345679, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI208431836, Length=81, Percent_Identity=45.679012345679, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI153252068, Length=76, Percent_Identity=39.4736842105263, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI223890219, Length=82, Percent_Identity=36.5853658536585, Blast_Score=68, Evalue=5e-12,
Organism=Homo sapiens, GI56699409, Length=76, Percent_Identity=38.1578947368421, Blast_Score=67, Evalue=7e-12,
Organism=Homo sapiens, GI5803137, Length=76, Percent_Identity=39.4736842105263, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI242117971, Length=76, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI21361809, Length=76, Percent_Identity=36.8421052631579, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI45238849, Length=81, Percent_Identity=48.1481481481481, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI32564506, Length=75, Percent_Identity=45.3333333333333, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=76, Percent_Identity=40.7894736842105, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17531963, Length=75, Percent_Identity=45.3333333333333, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI32564504, Length=75, Percent_Identity=45.3333333333333, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17531965, Length=75, Percent_Identity=45.3333333333333, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17567131, Length=81, Percent_Identity=43.2098765432099, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17567133, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6321013, Length=72, Percent_Identity=45.8333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574919, Length=80, Percent_Identity=43.75, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24663908, Length=80, Percent_Identity=43.75, Blast_Score=68, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161078702, Length=75, Percent_Identity=41.3333333333333, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24583875, Length=82, Percent_Identity=39.0243902439024, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281362714, Length=75, Percent_Identity=41.3333333333333, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281364913, Length=82, Percent_Identity=39.0243902439024, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24583877, Length=82, Percent_Identity=39.0243902439024, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24583873, Length=82, Percent_Identity=39.0243902439024, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI161078704, Length=75, Percent_Identity=41.3333333333333, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24583879, Length=82, Percent_Identity=39.0243902439024, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649515, Length=86, Percent_Identity=37.2093023255814, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649517, Length=86, Percent_Identity=37.2093023255814, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649513, Length=86, Percent_Identity=37.2093023255814, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24649519, Length=86, Percent_Identity=37.2093023255814, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24650782, Length=75, Percent_Identity=41.3333333333333, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24654797, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI45552715, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24654810, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24654800, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24654793, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24654807, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI17136378, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,
Organism=Drosophila melanogaster, GI24654804, Length=81, Percent_Identity=43.2098765432099, Blast_Score=63, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 16744; Mature: 16613

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MGNKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAA
CCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHHE
INGMNGQALGGRSIVVNEARPMEPRPPRSGGGFGGGGGGGYGGGRSGGGYGGGGGGGYGG
ECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GRGDGGGGYGGGRGGDSGGGYGGRGDGGFRSPYGSGARNGGGGGRGGYGGGNNGGY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GNKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAA
CCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCHHHE
INGMNGQALGGRSIVVNEARPMEPRPPRSGGGFGGGGGGGYGGGRSGGGYGGGGGGGYGG
ECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GRGDGGGGYGGGRGGDSGGGYGGRGDGGFRSPYGSGARNGGGGGRGGYGGGNNGGY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]