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The map label for this gene is rbpE [H]

Identifier: 120613407

GI number: 120613407

Start: 5334640

End: 5335011

Strand: Direct

Name: rbpE [H]

Synonym: Aave_4780

Alternate gene names: 120613407

Gene position: 5334640-5335011 (Clockwise)

Preceding gene: 120613402

Following gene: 120613408

Centisome position: 99.66

GC content: 69.09

Gene sequence:

>372_bases
ATGGGCAACAAACTCTACGTGGGCAACCTGCCCTATTCCTTCCGCGACGACGATCTGCAACAGACGTTCAGCCAGTACGG
TTCCGTGGCCAGCGCCAAGGTCATGATGGAACGCGACACCGGCCGCTCCAAGGGCTTCGGCTTCGTCGAGATGGGCAGCG
ATGCCGAGGCACAGGCCGCCATCCAGGGCGCGCACGGCCAGAACTTCGGCGGCCGCGACCTCGTGGTCAACGAAGCCCGT
CCGATGGAACCCCGTCCCCCCCGCAGCGGTGGCTTCGGTGGCGGCAACGGCGGCGGCTTCGGCGGTGGCCGCAGCGGCGG
CGGCTACGGTGGCGGCAATGGCGGTGGCTACGGCGGCGGTCGCGGCTACTGA

Upstream 100 bases:

>100_bases
CACGTTGCGGTGTTTGGTCGGTTTCGCGTCTCTGAAATCGTCAGGTTTGCTGATTGCGTCGGGCTCCATCGCGTTTTCAT
GTTTCTTTAAGGAGTCCTTC

Downstream 100 bases:

>100_bases
TGTGCCAGCAACCTCCGGGTTGCGAATGGATACAAAAAAGGGCCTCTCGAGGCCCTTTTTTTATTGATGCACAGGCGCAG
CAAGGGTGTGGTTCCGCTTG

Product: RNP-1-like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MGNKLYVGNLPYSFRDDDLQQTFSQYGSVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGAHGQNFGGRDLVVNEAR
PMEPRPPRSGGFGGGNGGGFGGGRSGGGYGGGNGGGYGGGRGY

Sequences:

>Translated_123_residues
MGNKLYVGNLPYSFRDDDLQQTFSQYGSVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGAHGQNFGGRDLVVNEAR
PMEPRPPRSGGFGGGNGGGFGGGRSGGGYGGGNGGGYGGGRGY
>Mature_122_residues
GNKLYVGNLPYSFRDDDLQQTFSQYGSVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGAHGQNFGGRDLVVNEARP
MEPRPPRSGGFGGGNGGGFGGGRSGGGYGGGNGGGYGGGRGY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI24762232, Length=83, Percent_Identity=43.3734939759036, Blast_Score=72, Evalue=1e-13,
Organism=Homo sapiens, GI289547743, Length=80, Percent_Identity=43.75, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI289547741, Length=80, Percent_Identity=43.75, Blast_Score=69, Evalue=8e-13,
Organism=Homo sapiens, GI70780381, Length=80, Percent_Identity=43.75, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI289547602, Length=80, Percent_Identity=42.5, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI289547605, Length=86, Percent_Identity=40.6976744186046, Blast_Score=67, Evalue=5e-12,
Organism=Homo sapiens, GI71164894, Length=86, Percent_Identity=40.6976744186046, Blast_Score=66, Evalue=9e-12,
Organism=Homo sapiens, GI71164871, Length=79, Percent_Identity=43.0379746835443, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI289547568, Length=79, Percent_Identity=43.0379746835443, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI289547566, Length=79, Percent_Identity=43.0379746835443, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI38570081, Length=79, Percent_Identity=43.0379746835443, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI5729794, Length=79, Percent_Identity=43.0379746835443, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI14149675, Length=75, Percent_Identity=38.6666666666667, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI208431833, Length=84, Percent_Identity=44.047619047619, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI68303645, Length=79, Percent_Identity=41.7721518987342, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI134152719, Length=79, Percent_Identity=41.7721518987342, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI134152680, Length=79, Percent_Identity=41.7721518987342, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI68303647, Length=79, Percent_Identity=41.7721518987342, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI4504715, Length=84, Percent_Identity=44.047619047619, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI208431836, Length=84, Percent_Identity=44.047619047619, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI4557493, Length=75, Percent_Identity=37.3333333333333, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=76, Percent_Identity=44.7368421052632, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17508585, Length=75, Percent_Identity=37.3333333333333, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=40, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574919, Length=80, Percent_Identity=43.75, Blast_Score=69, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24663908, Length=80, Percent_Identity=43.75, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24583879, Length=85, Percent_Identity=38.8235294117647, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24583873, Length=85, Percent_Identity=38.8235294117647, Blast_Score=65, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281364913, Length=85, Percent_Identity=38.8235294117647, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24583877, Length=85, Percent_Identity=38.8235294117647, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24583875, Length=85, Percent_Identity=38.8235294117647, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574145, Length=86, Percent_Identity=40.6976744186046, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007320, Length=86, Percent_Identity=40.6976744186046, Blast_Score=63, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17137710, Length=75, Percent_Identity=38.6666666666667, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 12511; Mature: 12380

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNKLYVGNLPYSFRDDDLQQTFSQYGSVASAKVMMERDTGRSKGFGFVEMGSDAEAQAA
CCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHE
IQGAHGQNFGGRDLVVNEARPMEPRPPRSGGFGGGNGGGFGGGRSGGGYGGGNGGGYGGG
EECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RGY
CCC
>Mature Secondary Structure 
GNKLYVGNLPYSFRDDDLQQTFSQYGSVASAKVMMERDTGRSKGFGFVEMGSDAEAQAA
CCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEECCCCCCHHE
IQGAHGQNFGGRDLVVNEARPMEPRPPRSGGFGGGNGGGFGGGRSGGGYGGGNGGGYGGG
EECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RGY
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]