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The map label for this gene is rnaSA3 [H]

Identifier: 120613387

GI number: 120613387

Start: 5309396

End: 5309800

Strand: Direct

Name: rnaSA3 [H]

Synonym: Aave_4760

Alternate gene names: 120613387

Gene position: 5309396-5309800 (Clockwise)

Preceding gene: 120613386

Following gene: 120613388

Centisome position: 99.19

GC content: 66.42

Gene sequence:

>405_bases
ATGCTGAAGGCCATCGCCATCCGGGCGTACACGGCAGGTATTGCATACGCTCTGGGTGCCGCGTTCGTTCTGGCCCCTCT
CTCGGGGGAAGCCCGGAACGCTCCGTCCCCGGGCGGAACCGACACCATCGCATTGGCCGAACTTCCCACGCAAGGACGCG
CCACCTTCCGTCTCATCCGCGAAGGCGGCCCCTTCCCCTACGACAAGGACGGCAGCGTCTTTGGCAACCGGGAGCGCCTG
TTGCCCTCGCACAAGCGGGGCTACTACCGGGAATACACCGTCAGGACGCCGGGAGCGAGCAACCGTGGTGCACGGCGGAT
CGTATGCGGCGGCCCCCCGCGCACGCCGGACGCCTGCTACTACACCAGCGACCACTACGCGAGCTTTCGGAAGATCGTGG
AATGA

Upstream 100 bases:

>100_bases
TGCTCAATTATTGAGCAGGCGCTTGCTTTTTGGGGGTCTTTACGTCACACTACTGGCTCGAAATTTCGGGTAAACCCGTA
GTTTCTGAAAGGTGTAGTTG

Downstream 100 bases:

>100_bases
CTTGGCTCCGGGCCTTTGCGGGCAGGAGCCGATGCACAGAACGATCACGGGCCTGCCGACTCTTTTCCTGAAAACCGCGC
CATCCGGGCGGTTTCCGGCG

Product: guanine-specific ribonuclease N1 and T1

Products: NA

Alternate protein names: RNase Sa3 [H]

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MLKAIAIRAYTAGIAYALGAAFVLAPLSGEARNAPSPGGTDTIALAELPTQGRATFRLIREGGPFPYDKDGSVFGNRERL
LPSHKRGYYREYTVRTPGASNRGARRIVCGGPPRTPDACYYTSDHYASFRKIVE

Sequences:

>Translated_134_residues
MLKAIAIRAYTAGIAYALGAAFVLAPLSGEARNAPSPGGTDTIALAELPTQGRATFRLIREGGPFPYDKDGSVFGNRERL
LPSHKRGYYREYTVRTPGASNRGARRIVCGGPPRTPDACYYTSDHYASFRKIVE
>Mature_134_residues
MLKAIAIRAYTAGIAYALGAAFVLAPLSGEARNAPSPGGTDTIALAELPTQGRATFRLIREGGPFPYDKDGSVFGNRERL
LPSHKRGYYREYTVRTPGASNRGARRIVCGGPPRTPDACYYTSDHYASFRKIVE

Specific function: Unknown

COG id: COG4290

COG function: function code F; Guanyl-specific ribonuclease Sa

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonuclease N1/T1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000026
- InterPro:   IPR016191 [H]

Pfam domain/function: PF00545 Ribonuclease [H]

EC number: =3.1.27.3 [H]

Molecular weight: Translated: 14540; Mature: 14540

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKAIAIRAYTAGIAYALGAAFVLAPLSGEARNAPSPGGTDTIALAELPTQGRATFRLIR
CCCEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
EGGPFPYDKDGSVFGNRERLLPSHKRGYYREYTVRTPGASNRGARRIVCGGPPRTPDACY
CCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCEE
YTSDHYASFRKIVE
EECHHHHHHHHHCC
>Mature Secondary Structure
MLKAIAIRAYTAGIAYALGAAFVLAPLSGEARNAPSPGGTDTIALAELPTQGRATFRLIR
CCCEEEEHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEE
EGGPFPYDKDGSVFGNRERLLPSHKRGYYREYTVRTPGASNRGARRIVCGGPPRTPDACY
CCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCEE
YTSDHYASFRKIVE
EECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1398084 [H]