BacMap

Definition	Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession	NC_008752
Length	5,352,772

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The map label for this gene is 120613259

Identifier: 120613259

GI number: 120613259

Start: 5150951

End: 5151505

Strand: Direct

Name: 120613259

Synonym: Aave_4628

Alternate gene names: NA

Gene position: 5150951-5151505 (Clockwise)

Preceding gene: 120613257

Following gene: 120613260

Centisome position: 96.23

GC content: 68.47

Gene sequence:

>555_bases
ATGCCCCGAACCGCCACGCCCGCCGCCGACCCTTCCGCCGCCAGGGGCGGCCGCCGCATCCAGGTGCGGCGCTCGGGCGT
GCACGGCAAGGGCGTGTTCGCGGTGCAGGATATCGCCGAAGGCGAAGTGCTGATCGAATACACGGGCGAAATCATCAGCT
GGCAGGAAGCCCAGGACCGCCACCCGCACGATCCGCTGCAGCCGAACCATACCTTTTATTTCCACGTGGATGAAGACCGC
GTCATCGATGCCAACCATGGCGGGAATGCATCGCGCTGGATCAACCACAGCTGCGCGCCCAACTGCTACGCCGACGAACG
CGACGGCCGCATCTTCATCACCGCGCTGCGCAACATCCATGCGGGCGAGGAACTCAACTACGACTACGGCCTGATCATCG
ACGAGCGCTACACCCCCAGGCTCAAGGCCGAGTACCCCTGCTTTTGCGGCAGCGCCAACTGCCGCGGCACGCTGCTGGCG
CCCAAGCGCGGCTGGGCGCCGCCGGGGCCCACCGCGCCGCCGCCCAAGGCCGGCCGCAAGGGCGCGCGCCGATGA

Upstream 100 bases:

>100_bases
CCCCGGAGGGCGCTTCTACAATTCCGGTCTCTCGCGCGTACACGCGCATGCACACGCGCGCCTGCGCATGTGTGCCTATT
CAAACTAACAGAGTTTCGCC

Downstream 100 bases:

>100_bases
CCGGCACGGCGCAGCCGCTGCGCTGGCCCGCCGAGGCGGTGTGGGAGGCCGTGGCCCCGCTGCTGCCGGGCTTCACCGTC
GAAGTGCTGCCGAGCATAGA

Product: nuclear protein SET

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MPRTATPAADPSAARGGRRIQVRRSGVHGKGVFAVQDIAEGEVLIEYTGEIISWQEAQDRHPHDPLQPNHTFYFHVDEDR
VIDANHGGNASRWINHSCAPNCYADERDGRIFITALRNIHAGEELNYDYGLIIDERYTPRLKAEYPCFCGSANCRGTLLA
PKRGWAPPGPTAPPPKAGRKGARR

Sequences:

>Translated_184_residues
MPRTATPAADPSAARGGRRIQVRRSGVHGKGVFAVQDIAEGEVLIEYTGEIISWQEAQDRHPHDPLQPNHTFYFHVDEDR
VIDANHGGNASRWINHSCAPNCYADERDGRIFITALRNIHAGEELNYDYGLIIDERYTPRLKAEYPCFCGSANCRGTLLA
PKRGWAPPGPTAPPPKAGRKGARR
>Mature_183_residues
PRTATPAADPSAARGGRRIQVRRSGVHGKGVFAVQDIAEGEVLIEYTGEIISWQEAQDRHPHDPLQPNHTFYFHVDEDRV
IDANHGGNASRWINHSCAPNCYADERDGRIFITALRNIHAGEELNYDYGLIIDERYTPRLKAEYPCFCGSANCRGTLLAP
KRGWAPPGPTAPPPKAGRKGARR

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=40.2877697841727, Blast_Score=103, Evalue=1e-22,
Organism=Homo sapiens, GI7662046, Length=143, Percent_Identity=38.4615384615385, Blast_Score=99, Evalue=1e-21,
Organism=Homo sapiens, GI55741677, Length=148, Percent_Identity=35.1351351351351, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI56550039, Length=143, Percent_Identity=39.1608391608392, Blast_Score=99, Evalue=2e-21,
Organism=Homo sapiens, GI91718902, Length=140, Percent_Identity=38.5714285714286, Blast_Score=95, Evalue=4e-20,
Organism=Homo sapiens, GI19913358, Length=138, Percent_Identity=37.6811594202899, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI19913350, Length=138, Percent_Identity=37.6811594202899, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI19913348, Length=138, Percent_Identity=37.6811594202899, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI109633019, Length=138, Percent_Identity=37.6811594202899, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI156142197, Length=149, Percent_Identity=36.241610738255, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI156142199, Length=149, Percent_Identity=36.241610738255, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI224465233, Length=149, Percent_Identity=37.5838926174497, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI197313748, Length=142, Percent_Identity=35.9154929577465, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI23510384, Length=123, Percent_Identity=40.650406504065, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI148762969, Length=140, Percent_Identity=35.7142857142857, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI110349788, Length=139, Percent_Identity=32.3741007194245, Blast_Score=75, Evalue=3e-14,
Organism=Homo sapiens, GI19923586, Length=144, Percent_Identity=34.0277777777778, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI27477095, Length=144, Percent_Identity=34.0277777777778, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI19923202, Length=109, Percent_Identity=43.1192660550459, Blast_Score=74, Evalue=5e-14,
Organism=Homo sapiens, GI4507321, Length=158, Percent_Identity=32.2784810126582, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI21361095, Length=123, Percent_Identity=40.650406504065, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI13699811, Length=152, Percent_Identity=35.5263157894737, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI13375930, Length=156, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI301171597, Length=156, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI301171588, Length=156, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193210440, Length=143, Percent_Identity=39.8601398601399, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17552316, Length=146, Percent_Identity=36.986301369863, Blast_Score=92, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17552318, Length=146, Percent_Identity=36.986301369863, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17552320, Length=146, Percent_Identity=36.986301369863, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71993684, Length=161, Percent_Identity=32.2981366459627, Blast_Score=82, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71988186, Length=138, Percent_Identity=38.4057971014493, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25141373, Length=137, Percent_Identity=33.5766423357664, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193202392, Length=137, Percent_Identity=33.5766423357664, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17565204, Length=162, Percent_Identity=31.4814814814815, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25148426, Length=140, Percent_Identity=37.8571428571429, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25148423, Length=141, Percent_Identity=37.5886524822695, Blast_Score=66, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6321911, Length=140, Percent_Identity=42.1428571428571, Blast_Score=94, Evalue=1e-20,
Organism=Saccharomyces cerevisiae, GI6322293, Length=144, Percent_Identity=34.0277777777778, Blast_Score=79, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24639197, Length=140, Percent_Identity=39.2857142857143, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28571451, Length=140, Percent_Identity=39.2857142857143, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI62472551, Length=143, Percent_Identity=39.8601398601399, Blast_Score=102, Evalue=1e-22,
Organism=Drosophila melanogaster, GI17136558, Length=143, Percent_Identity=39.8601398601399, Blast_Score=102, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19550181, Length=143, Percent_Identity=39.8601398601399, Blast_Score=102, Evalue=1e-22,
Organism=Drosophila melanogaster, GI19550184, Length=143, Percent_Identity=39.8601398601399, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17136556, Length=143, Percent_Identity=39.8601398601399, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17737643, Length=164, Percent_Identity=32.9268292682927, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24650756, Length=149, Percent_Identity=33.5570469798658, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18543183, Length=154, Percent_Identity=31.8181818181818, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24641786, Length=141, Percent_Identity=34.7517730496454, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI281360813, Length=141, Percent_Identity=34.7517730496454, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221331070, Length=119, Percent_Identity=41.1764705882353, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24662251, Length=119, Percent_Identity=41.1764705882353, Blast_Score=71, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24647050, Length=151, Percent_Identity=35.7615894039735, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI161078181, Length=156, Percent_Identity=30.1282051282051, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20409; Mature: 20278

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTATPAADPSAARGGRRIQVRRSGVHGKGVFAVQDIAEGEVLIEYTGEIISWQEAQDR
CCCCCCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCEEEECCCCCC
HPHDPLQPNHTFYFHVDEDRVIDANHGGNASRWINHSCAPNCYADERDGRIFITALRNIH
CCCCCCCCCCEEEEEECCCEEEECCCCCCHHHEECCCCCCCCCCCCCCCEEEEEEECCCC
AGEELNYDYGLIIDERYTPRLKAEYPCFCGSANCRGTLLAPKRGWAPPGPTAPPPKAGRK
CCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
GARR
CCCC
>Mature Secondary Structure 
PRTATPAADPSAARGGRRIQVRRSGVHGKGVFAVQDIAEGEVLIEYTGEIISWQEAQDR
CCCCCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCEEEECCCCCC
HPHDPLQPNHTFYFHVDEDRVIDANHGGNASRWINHSCAPNCYADERDGRIFITALRNIH
CCCCCCCCCCEEEEEECCCEEEECCCCCCHHHEECCCCCCCCCCCCCCCEEEEEEECCCC
AGEELNYDYGLIIDERYTPRLKAEYPCFCGSANCRGTLLAPKRGWAPPGPTAPPPKAGRK
CCCCCCCCEEEEECCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
GARR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA