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The map label for this gene is exbD [H]

Identifier: 120613184

GI number: 120613184

Start: 5071143

End: 5071589

Strand: Reverse

Name: exbD [H]

Synonym: Aave_4551

Alternate gene names: 120613184

Gene position: 5071589-5071143 (Counterclockwise)

Preceding gene: 120613185

Following gene: 120613182

Centisome position: 94.75

GC content: 72.26

Gene sequence:

>447_bases
ATGGCATTCGGCCGCCTCGAACGCACATCCGCCCCGAAGCCGATGAGCGACATCAACATGACGCCCCTGGTGGACGTCAT
GCTGGTGCTCGTGGTCATCTTCATCCTGGCCGCGCCACTGCTGGCCAGTGCCATCCGGCTCGACCTGCCGCGCGCGCAAA
GCACCACGCAGGGCGCCGCCGGTGACTCGGTCGAAGTCGCGATCGATGCCGCGGGCCAGGTCTTCGTCGGCGGCGTGCCC
GTGGATGGCGCCGCCCTGGCCGAACGGCTGCGCGGCGTGGCACAGGCGCATCCACAAGCCGAGGTGCAGTTGCGTGCCGA
TGCCGGCGTGCCGTATGGCCGGGTGGTCGAGGTGATGGGCGCCGCCCATGCCGCGGGCCTGCACCGCATCGGATTCGTGG
CCGAGCCCGAGGCCTCCCCGCCGGCCGCTGCCGCCGCGCGCCCCTGA

Upstream 100 bases:

>100_bases
GCCGAGCTCGAAGGCTTCGCCCTCGACCTGCGCGAACTGCTCCTGGACGGGCCGCCCTCCCGCGGCGGCTGATCCACTGC
CTTCAGCCCGCCCGCGACCC

Downstream 100 bases:

>100_bases
TCCGCCTGCCGGGGCGCTCCTCGCCGGCGGTGGGGTGCCGCTCACCCGTCCAGGACCTCGCGCACCACCGGGGCGCCCGG
TGTCTTGCCCCGGAAGACGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MAFGRLERTSAPKPMSDINMTPLVDVMLVLVVIFILAAPLLASAIRLDLPRAQSTTQGAAGDSVEVAIDAAGQVFVGGVP
VDGAALAERLRGVAQAHPQAEVQLRADAGVPYGRVVEVMGAAHAAGLHRIGFVAEPEASPPAAAAARP

Sequences:

>Translated_148_residues
MAFGRLERTSAPKPMSDINMTPLVDVMLVLVVIFILAAPLLASAIRLDLPRAQSTTQGAAGDSVEVAIDAAGQVFVGGVP
VDGAALAERLRGVAQAHPQAEVQLRADAGVPYGRVVEVMGAAHAAGLHRIGFVAEPEASPPAAAAARP
>Mature_147_residues
AFGRLERTSAPKPMSDINMTPLVDVMLVLVVIFILAAPLLASAIRLDLPRAQSTTQGAAGDSVEVAIDAAGQVFVGGVPV
DGAALAERLRGVAQAHPQAEVQLRADAGVPYGRVVEVMGAAHAAGLHRIGFVAEPEASPPAAAAARP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=139, Percent_Identity=34.5323741007194, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15092; Mature: 14960

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGRLERTSAPKPMSDINMTPLVDVMLVLVVIFILAAPLLASAIRLDLPRAQSTTQGAA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GDSVEVAIDAAGQVFVGGVPVDGAALAERLRGVAQAHPQAEVQLRADAGVPYGRVVEVMG
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
AAHAAGLHRIGFVAEPEASPPAAAAARP
HHHHHHHHHCCCEECCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGRLERTSAPKPMSDINMTPLVDVMLVLVVIFILAAPLLASAIRLDLPRAQSTTQGAA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GDSVEVAIDAAGQVFVGGVPVDGAALAERLRGVAQAHPQAEVQLRADAGVPYGRVVEVMG
CCCEEEEEECCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
AAHAAGLHRIGFVAEPEASPPAAAAARP
HHHHHHHHHCCCEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]