| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120611778
Identifier: 120611778
GI number: 120611778
Start: 3441520
End: 3442143
Strand: Direct
Name: 120611778
Synonym: Aave_3118
Alternate gene names: NA
Gene position: 3441520-3442143 (Clockwise)
Preceding gene: 120611777
Following gene: 120611781
Centisome position: 64.29
GC content: 69.87
Gene sequence:
>624_bases ATGACCGACCCCGCTTTTTCGATCTGTGTCTATCTCGGCTCGCGCCCCGGCGAGAACCCGGCCTTCACCGATGCGGCCAT CGCCGTGGGGGAATGGATCGGGCGCCATGGCGGCCAACTGGTGTACGGAGGTGGCCGCAGCGGGCTGATGGGCGCGGTGG CCGAGGCCACGCGCCGGGCCGGCGGGCGGGTCGTGGGCATCATCCCGCAGGCCCTGGTGGACAAGGAACTGGCCAACCAA GCCTGCGACGAGCTGCACGTCGTGCAGACCATGCACGAGCGCAAGGCCATGATGGCCGAGCGCTGCGACGCCTTCATCGC CCTGCCCGGGGGCATAGGCACGTTCGAGGAGCTTTTCGAGGTCTGGACGTGGCGCCAGCTCGGCTACCACGACAAGCCGC TGGGCCTGCTCGACGTGGACGGCTACTACGGCGGGCTGCTCGACGTGGACGGCTACTACGGCGGGCTGCTCGACTTCCTG CGGCACAGCGTGCGCAGCGGCCTGATGAGCGACTGGCAGATGGGGCTGCTGTCGGTGGACTCCGATCCCGATGCCCTGCT GCGCGCGCTGGTGGAGGCCGCCGGCACCCGCCAGGACTCCGTGCCGCTGCGCACGGTGATCTGA
Upstream 100 bases:
>100_bases TGTCCAAGCGCGCCAAGGACATGGGCAGCGCCGCCGTGCTGCTGAGCCTGATCTACTGTGCCGCGGTATGGGCCGCGGCA TTGTTCCAGAGGTTTTACGG
Downstream 100 bases:
>100_bases CGGCAGGCAGGGCGGCCGTCGGCCTGTGCCGGATGGTGCTGCCGTCTCAGACGGCCGCGTCGTCGAGGTCGCCCGTCCGG ATGCGCACCACCCGCTCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 207; Mature: 206
Protein sequence:
>207_residues MTDPAFSICVYLGSRPGENPAFTDAAIAVGEWIGRHGGQLVYGGGRSGLMGAVAEATRRAGGRVVGIIPQALVDKELANQ ACDELHVVQTMHERKAMMAERCDAFIALPGGIGTFEELFEVWTWRQLGYHDKPLGLLDVDGYYGGLLDVDGYYGGLLDFL RHSVRSGLMSDWQMGLLSVDSDPDALLRALVEAAGTRQDSVPLRTVI
Sequences:
>Translated_207_residues MTDPAFSICVYLGSRPGENPAFTDAAIAVGEWIGRHGGQLVYGGGRSGLMGAVAEATRRAGGRVVGIIPQALVDKELANQ ACDELHVVQTMHERKAMMAERCDAFIALPGGIGTFEELFEVWTWRQLGYHDKPLGLLDVDGYYGGLLDVDGYYGGLLDFL RHSVRSGLMSDWQMGLLSVDSDPDALLRALVEAAGTRQDSVPLRTVI >Mature_206_residues TDPAFSICVYLGSRPGENPAFTDAAIAVGEWIGRHGGQLVYGGGRSGLMGAVAEATRRAGGRVVGIIPQALVDKELANQA CDELHVVQTMHERKAMMAERCDAFIALPGGIGTFEELFEVWTWRQLGYHDKPLGLLDVDGYYGGLLDVDGYYGGLLDFLR HSVRSGLMSDWQMGLLSVDSDPDALLRALVEAAGTRQDSVPLRTVI
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LOG family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322406, Length=210, Percent_Identity=38.0952380952381, Blast_Score=133, Evalue=2e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005269 [H]
Pfam domain/function: PF03641 Lysine_decarbox [H]
EC number: NA
Molecular weight: Translated: 22355; Mature: 22224
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDPAFSICVYLGSRPGENPAFTDAAIAVGEWIGRHGGQLVYGGGRSGLMGAVAEATRRA CCCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC GGRVVGIIPQALVDKELANQACDELHVVQTMHERKAMMAERCDAFIALPGGIGTFEELFE CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHH VWTWRQLGYHDKPLGLLDVDGYYGGLLDVDGYYGGLLDFLRHSVRSGLMSDWQMGLLSVD HHHHHHCCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEECC SDPDALLRALVEAAGTRQDSVPLRTVI CCHHHHHHHHHHHHCCCCCCCCHHHCC >Mature Secondary Structure TDPAFSICVYLGSRPGENPAFTDAAIAVGEWIGRHGGQLVYGGGRSGLMGAVAEATRRA CCCHHHHHEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHC GGRVVGIIPQALVDKELANQACDELHVVQTMHERKAMMAERCDAFIALPGGIGTFEELFE CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHH VWTWRQLGYHDKPLGLLDVDGYYGGLLDVDGYYGGLLDFLRHSVRSGLMSDWQMGLLSVD HHHHHHCCCCCCCCCEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCEECC SDPDALLRALVEAAGTRQDSVPLRTVI CCHHHHHHHHHHHHCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 2116366 [H]