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The map label for this gene is 120611773

Identifier: 120611773

GI number: 120611773

Start: 3438557

End: 3439126

Strand: Direct

Name: 120611773

Synonym: Aave_3113

Alternate gene names: NA

Gene position: 3438557-3439126 (Clockwise)

Preceding gene: 120611766

Following gene: 120611774

Centisome position: 64.24

GC content: 59.82

Gene sequence:

>570_bases
TTGGCGACCGAACAGGAACTGTCCGACTTTCTCAAAAGCGTGGAAAAGCGAGCCTTCAAGCGCTCGCTCTACCATGTGCG
CAATGAGGAAGCGGCTTTGGACATCGTCCAGGACAGCATGCTCAAGCTGGCCGAGCACTACGGGGACAAGCCGCCGTCGG
AGCTGCCGATGCTGTTCCAGCGCATCCTGTCCAACTGCACGCTGGACTGGTTCCGCCGCCAGAAGACCCGCAACGCGCTC
TTTTCGAACATGAGCGACTTCGAGGGACCGGGAGACAATGGCGACGACTTCGATCTGCTGGAAGCCTATTCGGGTCCCGA
GGACACGCAGACATCGCAGAGCGCGGAAGATCTCGTCCGCCGCGCCCAGGTCTTCCGGGACATCGAATCCGAGATACAGG
AGTTGCCCGCCCGTCAACGGGAGGCTTTTCTGATGCGTTACTGGGAAGAGATGGATGTTGCGGAAACAGCCGCGGCCATG
GGCTGCTCGGAAGGCAGCGTCAAGACCCATTGTTTCCGCGCCATCCAGACCCTCAGCAAGGCACTGAAGGCACGAGGAAT
CGAACTATGA

Upstream 100 bases:

>100_bases
AAAAACATCACGCCGATGCGATAATGCGCGCCGAACACCCGCCGTCGCGTTGCGTGCCAGGCGGCCCTCCTTCCCTGCCC
TTCCCGGGCCCCGACCTCTC

Downstream 100 bases:

>100_bases
ACTCCACTTCCCAATCCCTTTCCGTCCAGGAAGCCGGCGCGGAGCGATTCGCCCGCCGCGTCACCGCGCGCCTGTCGGAG
GGCACGGCGGACATGCCCTA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MATEQELSDFLKSVEKRAFKRSLYHVRNEEAALDIVQDSMLKLAEHYGDKPPSELPMLFQRILSNCTLDWFRRQKTRNAL
FSNMSDFEGPGDNGDDFDLLEAYSGPEDTQTSQSAEDLVRRAQVFRDIESEIQELPARQREAFLMRYWEEMDVAETAAAM
GCSEGSVKTHCFRAIQTLSKALKARGIEL

Sequences:

>Translated_189_residues
MATEQELSDFLKSVEKRAFKRSLYHVRNEEAALDIVQDSMLKLAEHYGDKPPSELPMLFQRILSNCTLDWFRRQKTRNAL
FSNMSDFEGPGDNGDDFDLLEAYSGPEDTQTSQSAEDLVRRAQVFRDIESEIQELPARQREAFLMRYWEEMDVAETAAAM
GCSEGSVKTHCFRAIQTLSKALKARGIEL
>Mature_188_residues
ATEQELSDFLKSVEKRAFKRSLYHVRNEEAALDIVQDSMLKLAEHYGDKPPSELPMLFQRILSNCTLDWFRRQKTRNALF
SNMSDFEGPGDNGDDFDLLEAYSGPEDTQTSQSAEDLVRRAQVFRDIESEIQELPARQREAFLMRYWEEMDVAETAAAMG
CSEGSVKTHCFRAIQTLSKALKARGIEL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21653; Mature: 21521

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATEQELSDFLKSVEKRAFKRSLYHVRNEEAALDIVQDSMLKLAEHYGDKPPSELPMLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RILSNCTLDWFRRQKTRNALFSNMSDFEGPGDNGDDFDLLEAYSGPEDTQTSQSAEDLVR
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHH
RAQVFRDIESEIQELPARQREAFLMRYWEEMDVAETAAAMGCSEGSVKTHCFRAIQTLSK
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALKARGIEL
HHHHCCCCC
>Mature Secondary Structure 
ATEQELSDFLKSVEKRAFKRSLYHVRNEEAALDIVQDSMLKLAEHYGDKPPSELPMLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RILSNCTLDWFRRQKTRNALFSNMSDFEGPGDNGDDFDLLEAYSGPEDTQTSQSAEDLVR
HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHH
RAQVFRDIESEIQELPARQREAFLMRYWEEMDVAETAAAMGCSEGSVKTHCFRAIQTLSK
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALKARGIEL
HHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA