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The map label for this gene is ompW [C]

Identifier: 120611754

GI number: 120611754

Start: 3414124

End: 3414783

Strand: Reverse

Name: ompW [C]

Synonym: Aave_3094

Alternate gene names: 120611754

Gene position: 3414783-3414124 (Counterclockwise)

Preceding gene: 120611755

Following gene: 120611751

Centisome position: 63.79

GC content: 64.09

Gene sequence:

>660_bases
TTGCAAGCCCAATGCGTCCACGGGGGCCGTCCCCGTTCAACCGCATCGAGTTCTCCTATGAAAAAGAATCTCCTCGCCCT
GGCTGCCCTGTGCGTTCTGACTTCCGGCGCTGCCCATGCGCAGGCTGCCGACGGCCAAGGCCCCTGGATGGTCCGCGCCC
GCGCGGTGCACCTGGACAGTGCCAACAAGGACAGCACCGGCCTGGGCCTGTCGATCAACAACAAGACCATTCCTGAAGTC
GATATCTCGTACTTTTTCGACAAGAACATCGCCGCGGAGCTGGTGCTGACCGTGCCCCAGAAGCAGGATGTGCGCTCCAG
TGCCCTGGGCGCCCAGATCGGCACGCTGAAGCACCTGCCGCCGTCGCTGATGGTGCAGTACCACTTCGACGCGCCCGGCT
TCCGGCCCTATGTGGGCGCCGGCATCAACTACACGCGATTTTCCAGCGTGCGCCTGCCCGCCGGCGTGAGCATCGACAAG
AGCAGCTGGGGCGGCGCCCTGCAGGTCGGCGTGGACATTCCGCTCACCAAGAACCTGTCGCTGAACTTCGACATCAAGAA
GGTGTATATCCGCACGGACGTGGCTGCCAATGGCGCCAAGCTGGGCACGCTCAAGATCGATCCGGTGCTTGCCGGCGTGG
GCCTGGGCTGGCGCTTCTGA

Upstream 100 bases:

>100_bases
GGCCGGCGTGACGCTCGTGCAACGCTGGCGCGGGCGCAAGGCCGGGACGCATTGAGACCCCGCATGGCCTTTTGATCTGT
GGCAAGGCGGGCAGGGCGTT

Downstream 100 bases:

>100_bases
CCGGGAGGGAGGCTCCTGGGGGCTTTCTGTCCTGGTGGGACCGTCCGGGGGCCGGCGCGCATGCGCCGGCCCTTTCTGTT
TCCGGGACGTCCAGGAAAAA

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MQAQCVHGGRPRSTASSSPMKKNLLALAALCVLTSGAAHAQAADGQGPWMVRARAVHLDSANKDSTGLGLSINNKTIPEV
DISYFFDKNIAAELVLTVPQKQDVRSSALGAQIGTLKHLPPSLMVQYHFDAPGFRPYVGAGINYTRFSSVRLPAGVSIDK
SSWGGALQVGVDIPLTKNLSLNFDIKKVYIRTDVAANGAKLGTLKIDPVLAGVGLGWRF

Sequences:

>Translated_219_residues
MQAQCVHGGRPRSTASSSPMKKNLLALAALCVLTSGAAHAQAADGQGPWMVRARAVHLDSANKDSTGLGLSINNKTIPEV
DISYFFDKNIAAELVLTVPQKQDVRSSALGAQIGTLKHLPPSLMVQYHFDAPGFRPYVGAGINYTRFSSVRLPAGVSIDK
SSWGGALQVGVDIPLTKNLSLNFDIKKVYIRTDVAANGAKLGTLKIDPVLAGVGLGWRF
>Mature_219_residues
MQAQCVHGGRPRSTASSSPMKKNLLALAALCVLTSGAAHAQAADGQGPWMVRARAVHLDSANKDSTGLGLSINNKTIPEV
DISYFFDKNIAAELVLTVPQKQDVRSSALGAQIGTLKHLPPSLMVQYHFDAPGFRPYVGAGINYTRFSSVRLPAGVSIDK
SSWGGALQVGVDIPLTKNLSLNFDIKKVYIRTDVAANGAKLGTLKIDPVLAGVGLGWRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=219, Percent_Identity=35.6164383561644, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23238; Mature: 23238

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAQCVHGGRPRSTASSSPMKKNLLALAALCVLTSGAAHAQAADGQGPWMVRARAVHLDS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECC
ANKDSTGLGLSINNKTIPEVDISYFFDKNIAAELVLTVPQKQDVRSSALGAQIGTLKHLP
CCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCHHHCCC
PSLMVQYHFDAPGFRPYVGAGINYTRFSSVRLPAGVSIDKSSWGGALQVGVDIPLTKNLS
CCCEEEEECCCCCCCCEECCCCCEEEECCEECCCCCEEECCCCCCEEEEEEECCEECCCE
LNFDIKKVYIRTDVAANGAKLGTLKIDPVLAGVGLGWRF
EEEEEEEEEEEECCCCCCCEEEEEEECCEEEECCCCCCC
>Mature Secondary Structure
MQAQCVHGGRPRSTASSSPMKKNLLALAALCVLTSGAAHAQAADGQGPWMVRARAVHLDS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEECC
ANKDSTGLGLSINNKTIPEVDISYFFDKNIAAELVLTVPQKQDVRSSALGAQIGTLKHLP
CCCCCCCEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHCHHHCCC
PSLMVQYHFDAPGFRPYVGAGINYTRFSSVRLPAGVSIDKSSWGGALQVGVDIPLTKNLS
CCCEEEEECCCCCCCCEECCCCCEEEECCEECCCCCEEECCCCCCEEEEEEECCEECCCE
LNFDIKKVYIRTDVAANGAKLGTLKIDPVLAGVGLGWRF
EEEEEEEEEEEECCCCCCCEEEEEEECCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]