Click here to switch to the map view.

The map label for this gene is ydcP [H]

Identifier: 120611746

GI number: 120611746

Start: 3402278

End: 3404287

Strand: Direct

Name: ydcP [H]

Synonym: Aave_3086

Alternate gene names: 120611746

Gene position: 3402278-3404287 (Clockwise)

Preceding gene: 120611739

Following gene: 120611747

Centisome position: 63.56

GC content: 68.21

Gene sequence:

>2010_bases
ATGTCCCTCCTGCCCCACCAGCTCGAACTTCTCTCCCCCGCCCGCGACGCCGACATCGGCATCGAGGCGGTCAACCATGG
CGCGGACGCGGTCTATATCGGCGGACCGGCCTTCGGCGCGCGGGCCAGCGCGGGCAACGAACTGCGCGACCTGGAGCGGC
TCATCCGCCATGCGCACCGCTTCCACAGCCGCATCTTCGTCACGCTCAACACCATCCTGCGCGACGACGAACTCGAAGGC
GCCCGCCGCATGGCCTGGCAGGTGTACGAGGCCGGCGCCGACGCGCTCATCATCCAGGACATGGGCCTGCTGGAAATCGA
CCTGCCCCCCATCCAGCTGCACGCGAGCACACAGACGGACATCCGCACGCCCGAGAAGGCTCGCTTCCTGCAGGACGCCG
GGCTGTCGCAGATCGTGCTGGCGCGCGAGCTCACGGTGCAGGAGATCGCGGCCATCCGCGCTGCGACCGACCCGGAGCGC
TGCACGATCGAGTTCTTCATCCACGGCGCACTCTGCGTGGCCTACAGCGGCCAGTGCTACATCAGCCACGCGCATACCGG
CCGCAGCGCCAACCGCGGCGACTGCAGCCAGGCCTGCCGCCTGCCCTACCAGGTGACGGACGACGCCGGCCGCTTCATCG
CGCACGACAAGCACGTGCTCTCGATGAAGGACAACAACCAGTCGGCCAACCTGCGCCCCCTCATCGACGCGGGGGTGCGC
AGCTTCAAGATCGAAGGGCGGTACAAGGACATGGCCTACGTGAAGAACGTCACGGCCCACTACCGCCGGCTGCTCGACGA
GATCATCGAGGAGCGCGAGACCTCCGCCGCGCCCCTGGCCCGCTCTTCCAGCGGCCAGACGCGCTTCACCTTCACGCCCG
ACCCGAACCAGAACTTCAACCGCGAGTTCACCGACTATTTCGTGAACGGCCGCAAGGAAGACATCGGCGCGTTCGACACG
CCCAAGAACCCCGGCCAGGCGATCGGCTGGGTCACGCAGGTGGGCCCGAACTGGGTCGAGCTGGAAACCCATGCGCCCGA
CACCGTGCTGCACAACGGCGACGGCTTGTGCTACTGGGACCTGCAGAAGGAACTCGTGGGCGTGGCGATCAACCGCGCCG
AGGCGGCGCCCGGCAAGTCACGCAACCACTGGCGCGTGTTCCCGAAGGACCCGATGGAGGGTTTCAGGGACCTGCGCCGC
GGCACCGAGATCAACCGCAACCGGGACATGGACTGGGTGCGCACGCTCGAGAAGAAATCCAGCGAGCGGCGCATCGGCCT
GTGGGCGCATTTCACGGACACCGACGCCGGCTTCGCCCTCACGCTGACCGACGAGGACGGCTTCACCGGCACCGCCGAGG
TGGCGCATGCGCACGAGCCGGCCACCGATGCGGGGCGCGCGGAAGCCGCCCTGCGCGAACAGCTCGGCCGCTTCGGCGCC
ACGATCTTCCACGCGCACGACATCGCCGTCGCGATGCGGCAGCCGTGGTTCGTGCCCGCCTCCGTGCTGAACCCGCTGCG
CCGCGATGCCGTGGCCGCCCTGGAGGCGGCGCGCACCGAGGGCCTGCGGCGCCTGCCCCGCGCGCAACCCGTGGAGCCGC
CGGCGCCCTTCCCCGAGGACACCCTCACCTACCTGGCCAACGTGTTCAACCAGAAGGCGCATGACTTCTACATGAAGCAC
GGCGTGAAGGTGATCGACGCCGCCTACGAAAGCCAGGAAGAGGACGGCGAGGTGAGCCTGATGATCACCAAGCACTGCGT
GCGCTTTTCCATGAGCCTGTGCCCCAAGCAGGCCAAGGGCGTGATCGGGGTCAAGGGCACCATCAAGGCCGAACCCCTGC
ACCTGATCAACGGCAAGGAAAAGCTCACGCTGCGCTTCGACTGCAAGCCCTGCGAGATGCACGTGGTGGGCCGGATCAAG
AAATCGGTGCAGAACCAGCAGGCGCGCGAGGCGCAGGCGGTACCGATGCAGTTCTACCGCACGCGGCCCGTGCCCGGCGC
GCCGCACTGA

Upstream 100 bases:

>100_bases
GGATTCGGGCAGGGCCGAGGCGAAGACGGGCGGCCCCGGGCCGAAGTGCCGCGATGGCCCGGAGCGCCCCGGCGCCGGCC
TCCTGGGATAATCGCGCCCC

Downstream 100 bases:

>100_bases
AGCGGAGCGCGGCTCGCGCCGCGCGCGTCAGGTCCGCCGTACCGCTCCTGCAGCGGCGCTTTTCTCCGGTCCGCGTACCG
GCCCCGATCCGGCGTTCTCC

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 669; Mature: 668

Protein sequence:

>669_residues
MSLLPHQLELLSPARDADIGIEAVNHGADAVYIGGPAFGARASAGNELRDLERLIRHAHRFHSRIFVTLNTILRDDELEG
ARRMAWQVYEAGADALIIQDMGLLEIDLPPIQLHASTQTDIRTPEKARFLQDAGLSQIVLARELTVQEIAAIRAATDPER
CTIEFFIHGALCVAYSGQCYISHAHTGRSANRGDCSQACRLPYQVTDDAGRFIAHDKHVLSMKDNNQSANLRPLIDAGVR
SFKIEGRYKDMAYVKNVTAHYRRLLDEIIEERETSAAPLARSSSGQTRFTFTPDPNQNFNREFTDYFVNGRKEDIGAFDT
PKNPGQAIGWVTQVGPNWVELETHAPDTVLHNGDGLCYWDLQKELVGVAINRAEAAPGKSRNHWRVFPKDPMEGFRDLRR
GTEINRNRDMDWVRTLEKKSSERRIGLWAHFTDTDAGFALTLTDEDGFTGTAEVAHAHEPATDAGRAEAALREQLGRFGA
TIFHAHDIAVAMRQPWFVPASVLNPLRRDAVAALEAARTEGLRRLPRAQPVEPPAPFPEDTLTYLANVFNQKAHDFYMKH
GVKVIDAAYESQEEDGEVSLMITKHCVRFSMSLCPKQAKGVIGVKGTIKAEPLHLINGKEKLTLRFDCKPCEMHVVGRIK
KSVQNQQAREAQAVPMQFYRTRPVPGAPH

Sequences:

>Translated_669_residues
MSLLPHQLELLSPARDADIGIEAVNHGADAVYIGGPAFGARASAGNELRDLERLIRHAHRFHSRIFVTLNTILRDDELEG
ARRMAWQVYEAGADALIIQDMGLLEIDLPPIQLHASTQTDIRTPEKARFLQDAGLSQIVLARELTVQEIAAIRAATDPER
CTIEFFIHGALCVAYSGQCYISHAHTGRSANRGDCSQACRLPYQVTDDAGRFIAHDKHVLSMKDNNQSANLRPLIDAGVR
SFKIEGRYKDMAYVKNVTAHYRRLLDEIIEERETSAAPLARSSSGQTRFTFTPDPNQNFNREFTDYFVNGRKEDIGAFDT
PKNPGQAIGWVTQVGPNWVELETHAPDTVLHNGDGLCYWDLQKELVGVAINRAEAAPGKSRNHWRVFPKDPMEGFRDLRR
GTEINRNRDMDWVRTLEKKSSERRIGLWAHFTDTDAGFALTLTDEDGFTGTAEVAHAHEPATDAGRAEAALREQLGRFGA
TIFHAHDIAVAMRQPWFVPASVLNPLRRDAVAALEAARTEGLRRLPRAQPVEPPAPFPEDTLTYLANVFNQKAHDFYMKH
GVKVIDAAYESQEEDGEVSLMITKHCVRFSMSLCPKQAKGVIGVKGTIKAEPLHLINGKEKLTLRFDCKPCEMHVVGRIK
KSVQNQQAREAQAVPMQFYRTRPVPGAPH
>Mature_668_residues
SLLPHQLELLSPARDADIGIEAVNHGADAVYIGGPAFGARASAGNELRDLERLIRHAHRFHSRIFVTLNTILRDDELEGA
RRMAWQVYEAGADALIIQDMGLLEIDLPPIQLHASTQTDIRTPEKARFLQDAGLSQIVLARELTVQEIAAIRAATDPERC
TIEFFIHGALCVAYSGQCYISHAHTGRSANRGDCSQACRLPYQVTDDAGRFIAHDKHVLSMKDNNQSANLRPLIDAGVRS
FKIEGRYKDMAYVKNVTAHYRRLLDEIIEERETSAAPLARSSSGQTRFTFTPDPNQNFNREFTDYFVNGRKEDIGAFDTP
KNPGQAIGWVTQVGPNWVELETHAPDTVLHNGDGLCYWDLQKELVGVAINRAEAAPGKSRNHWRVFPKDPMEGFRDLRRG
TEINRNRDMDWVRTLEKKSSERRIGLWAHFTDTDAGFALTLTDEDGFTGTAEVAHAHEPATDAGRAEAALREQLGRFGAT
IFHAHDIAVAMRQPWFVPASVLNPLRRDAVAALEAARTEGLRRLPRAQPVEPPAPFPEDTLTYLANVFNQKAHDFYMKHG
VKVIDAAYESQEEDGEVSLMITKHCVRFSMSLCPKQAKGVIGVKGTIKAEPLHLINGKEKLTLRFDCKPCEMHVVGRIKK
SVQNQQAREAQAVPMQFYRTRPVPGAPH

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=644, Percent_Identity=54.6583850931677, Blast_Score=692, Evalue=0.0,
Organism=Escherichia coli, GI1788397, Length=310, Percent_Identity=31.2903225806452, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI1789548, Length=296, Percent_Identity=28.3783783783784, Blast_Score=96, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 74746; Mature: 74615

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLPHQLELLSPARDADIGIEAVNHGADAVYIGGPAFGARASAGNELRDLERLIRHAHR
CCCCCCHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
FHSRIFVTLNTILRDDELEGARRMAWQVYEAGADALIIQDMGLLEIDLPPIQLHASTQTD
HHHEEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCEEEECCCCCC
IRTPEKARFLQDAGLSQIVLARELTVQEIAAIRAATDPERCTIEFFIHGALCVAYSGQCY
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCEEE
ISHAHTGRSANRGDCSQACRLPYQVTDDAGRFIAHDKHVLSMKDNNQSANLRPLIDAGVR
EEECCCCCCCCCCCHHHHHCCCCEECCCCCCEEECCCEEEEEECCCCCCCCCHHHHCCCE
SFKIEGRYKDMAYVKNVTAHYRRLLDEIIEERETSAAPLARSSSGQTRFTFTPDPNQNFN
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
REFTDYFVNGRKEDIGAFDTPKNPGQAIGWVTQVGPNWVELETHAPDTVLHNGDGLCYWD
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCEEECCCCEEEEE
LQKELVGVAINRAEAAPGKSRNHWRVFPKDPMEGFRDLRRGTEINRNRDMDWVRTLEKKS
HHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
SERRIGLWAHFTDTDAGFALTLTDEDGFTGTAEVAHAHEPATDAGRAEAALREQLGRFGA
CCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
TIFHAHDIAVAMRQPWFVPASVLNPLRRDAVAALEAARTEGLRRLPRAQPVEPPAPFPED
EEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
TLTYLANVFNQKAHDFYMKHGVKVIDAAYESQEEDGEVSLMITKHCVRFSMSLCPKQAKG
HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCHHHCC
VIGVKGTIKAEPLHLINGKEKLTLRFDCKPCEMHVVGRIKKSVQNQQAREAQAVPMQFYR
EEEECCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
TRPVPGAPH
CCCCCCCCC
>Mature Secondary Structure 
SLLPHQLELLSPARDADIGIEAVNHGADAVYIGGPAFGARASAGNELRDLERLIRHAHR
CCCCCHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
FHSRIFVTLNTILRDDELEGARRMAWQVYEAGADALIIQDMGLLEIDLPPIQLHASTQTD
HHHEEEEEEEHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCEEEECCCCCC
IRTPEKARFLQDAGLSQIVLARELTVQEIAAIRAATDPERCTIEFFIHGALCVAYSGQCY
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEECCEEE
ISHAHTGRSANRGDCSQACRLPYQVTDDAGRFIAHDKHVLSMKDNNQSANLRPLIDAGVR
EEECCCCCCCCCCCHHHHHCCCCEECCCCCCEEECCCEEEEEECCCCCCCCCHHHHCCCE
SFKIEGRYKDMAYVKNVTAHYRRLLDEIIEERETSAAPLARSSSGQTRFTFTPDPNQNFN
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCC
REFTDYFVNGRKEDIGAFDTPKNPGQAIGWVTQVGPNWVELETHAPDTVLHNGDGLCYWD
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCEEECCCCEEEEE
LQKELVGVAINRAEAAPGKSRNHWRVFPKDPMEGFRDLRRGTEINRNRDMDWVRTLEKKS
HHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
SERRIGLWAHFTDTDAGFALTLTDEDGFTGTAEVAHAHEPATDAGRAEAALREQLGRFGA
CCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
TIFHAHDIAVAMRQPWFVPASVLNPLRRDAVAALEAARTEGLRRLPRAQPVEPPAPFPED
EEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
TLTYLANVFNQKAHDFYMKHGVKVIDAAYESQEEDGEVSLMITKHCVRFSMSLCPKQAKG
HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCHHHCC
VIGVKGTIKAEPLHLINGKEKLTLRFDCKPCEMHVVGRIKKSVQNQQAREAQAVPMQFYR
EEEECCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
TRPVPGAPH
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]