Click here to switch to the map view.

The map label for this gene is lrpC [H]

Identifier: 120611527

GI number: 120611527

Start: 3154775

End: 3155296

Strand: Reverse

Name: lrpC [H]

Synonym: Aave_2863

Alternate gene names: 120611527

Gene position: 3155296-3154775 (Counterclockwise)

Preceding gene: 120611532

Following gene: 120611525

Centisome position: 58.95

GC content: 68.77

Gene sequence:

>522_bases
TTGCCGGCGTTTTCATGGCTAAATGCGGGAGTGACCGAAAAGACCGAAATCGACGGCTACGATGCCCGCATCCTCGCGCT
CCTCCAGCAGGACGGCCGCATCACCATGGCCGAACTGGGGCGGCAGGTCCACCTCAGCCAGCCTGCCGTGACCGAGCGGG
TGCGCAAGCTCGAGGCCGCCGGCATCATCCGCGGCTACGGCGCCAGGGTGGACCATGCCGCCCTGGGCTACGGCATCCGC
GCCATCATCCGCGTGGGGCGCGCGGAGTACGCGCGCGTCGTGCGGCTCATCGAGCAGACGCCCGAGGTGGTCAACGCCTA
CAACGTGACCGGCGACGACAGCTGGATCCTGGAGATCGCGGTCATCGATGTCAGCCACCTCGACGCGGTCGTGACCGCGT
TCTGCCTGCTGGCCGAAACCTCCACCTGCATCGTGCTCAATGCCCCGCGGGAAAACGCCCCGGTGCTGCCGGCCCGCCGC
GACAGCATCCGGCCGCCCATCCGCAAGGTCACGGGCCGCTGA

Upstream 100 bases:

>100_bases
CCGTGGGGGAAAACGGAGGAGCGGCAGTGGTCGGCATGGCCCTTATCGTATGAAAGCTGTCGAGTGGCCGACAGGGCAAT
TCAACGGTTGATACGCTGCT

Downstream 100 bases:

>100_bases
GGCCGCGCAGCGGCCCGCCGCTCAAGCCTGCGGGCCCTGTGCTCCGGGTGCCGGCGCCTTCCGGCGCCCGGGCAGCGTGG
CCAGCACCACGCTCGCCACC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MPAFSWLNAGVTEKTEIDGYDARILALLQQDGRITMAELGRQVHLSQPAVTERVRKLEAAGIIRGYGARVDHAALGYGIR
AIIRVGRAEYARVVRLIEQTPEVVNAYNVTGDDSWILEIAVIDVSHLDAVVTAFCLLAETSTCIVLNAPRENAPVLPARR
DSIRPPIRKVTGR

Sequences:

>Translated_173_residues
MPAFSWLNAGVTEKTEIDGYDARILALLQQDGRITMAELGRQVHLSQPAVTERVRKLEAAGIIRGYGARVDHAALGYGIR
AIIRVGRAEYARVVRLIEQTPEVVNAYNVTGDDSWILEIAVIDVSHLDAVVTAFCLLAETSTCIVLNAPRENAPVLPARR
DSIRPPIRKVTGR
>Mature_172_residues
PAFSWLNAGVTEKTEIDGYDARILALLQQDGRITMAELGRQVHLSQPAVTERVRKLEAAGIIRGYGARVDHAALGYGIRA
IIRVGRAEYARVVRLIEQTPEVVNAYNVTGDDSWILEIAVIDVSHLDAVVTAFCLLAETSTCIVLNAPRENAPVLPARRD
SIRPPIRKVTGR

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=117, Percent_Identity=28.2051282051282, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18982; Mature: 18851

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFSWLNAGVTEKTEIDGYDARILALLQQDGRITMAELGRQVHLSQPAVTERVRKLEAA
CCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEHHHCCCEEECCCCHHHHHHHHHHHH
GIIRGYGARVDHAALGYGIRAIIRVGRAEYARVVRLIEQTPEVVNAYNVTGDDSWILEIA
HHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHEECCCCCCCEEEEEE
VIDVSHLDAVVTAFCLLAETSTCIVLNAPRENAPVLPARRDSIRPPIRKVTGR
EECHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCC
>Mature Secondary Structure 
PAFSWLNAGVTEKTEIDGYDARILALLQQDGRITMAELGRQVHLSQPAVTERVRKLEAA
CCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEHHHCCCEEECCCCHHHHHHHHHHHH
GIIRGYGARVDHAALGYGIRAIIRVGRAEYARVVRLIEQTPEVVNAYNVTGDDSWILEIA
HHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHEECCCCCCCEEEEEE
VIDVSHLDAVVTAFCLLAETSTCIVLNAPRENAPVLPARRDSIRPPIRKVTGR
EECHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]