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The map label for this gene is ypdB [C]

Identifier: 120610714

GI number: 120610714

Start: 2216291

End: 2217139

Strand: Reverse

Name: ypdB [C]

Synonym: Aave_2035

Alternate gene names: 120610714

Gene position: 2217139-2216291 (Counterclockwise)

Preceding gene: 120610715

Following gene: 120610711

Centisome position: 41.42

GC content: 73.38

Gene sequence:

>849_bases
ATGCACGCCCCCCGCGCCCTGATCGCCGAAGACGAACCGCTGCTGGCGCAAGCCCTGCGCCAGGAACTCGCGCGGGCCTG
GCCCGGGCTGCAGATCGCCGCGACCGTCGGCGACGGCCGCAGCGCGGTGCGCCAGGCGCTGGAACTGCGGCCGGACGTGC
TCTGGTTCGACATCCGCATGCCCGGCCTCGGCGGGTTGGAGGCGGCACTGGAGCTGGCCGATGCCTGGCCGCTCGACGCC
GCGCCGTTCCCCGCGCTGGTTTTCGTGACGGCCTACGACCAGTACGCGGTCGATGCCTTCGAGGCGCAGGCGCTGGACTA
CCTGCTCAAGCCCGTGCAGGCACCCCGGCTGCTCAAGACGGTGCAGAAGATCCAGGCGGTGCTGGCGGCCCGCGCCGCGC
CGCACGCGGACGCCGGCGGGCAGGGCCCCTGCGTTCCGTCCCGGGACGAGGCCGGCCTGGAAGCCCTGCTGGAACGGCTG
CGCGGGCTGGTGCCGGGCACGGCCGCGCCATCGTCCGGGGCCGCGCCCCTGACCGTCATCCAGGCCAGCAGCGGCCCGCG
CATCCACTTCGTGCCCGTGGCGGACGTGCTGGTGTTCGAGGCCGCGGACAAATACGTGCGCGTGCTCACCGCCCGGCAGG
AATACCTCATCCGCACGCCGCTCAAGGAACTCGCAGCGCAACTGGAGCCCGATGTGTTCTGGCAGATCCACCGCGGCACG
CTCGTGCGCGCGTCGGGCATCGAATCGGTGGAGCGGGACGAGTCGGGGCGGCTGCACCTGCGCCTGCGCGAGCGGCCCGA
GCGCCTGCCCGTGAGCCGGTTGCACGCGCACCGCTTCAAGGCGATGTGA

Upstream 100 bases:

>100_bases
GCCCGGGCGACGGCGGCCGCGGCACGCGGGTGCGCATCGTCCTTCCGCTGGAAAGGTCGGCCGCGGCCGCATCCACCACC
CCTTTGACCGGACCGCCGCC

Downstream 100 bases:

>100_bases
CCGACGGCGGCGGCGCCGCCAGCGGTTCAGCGGTTGGCGGCCAGCAGCAGCCCGCCCGCGCCCATGAAAAAGCCGCCCGT
GGCCTTGTTGAGGCGCGCCA

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MHAPRALIAEDEPLLAQALRQELARAWPGLQIAATVGDGRSAVRQALELRPDVLWFDIRMPGLGGLEAALELADAWPLDA
APFPALVFVTAYDQYAVDAFEAQALDYLLKPVQAPRLLKTVQKIQAVLAARAAPHADAGGQGPCVPSRDEAGLEALLERL
RGLVPGTAAPSSGAAPLTVIQASSGPRIHFVPVADVLVFEAADKYVRVLTARQEYLIRTPLKELAAQLEPDVFWQIHRGT
LVRASGIESVERDESGRLHLRLRERPERLPVSRLHAHRFKAM

Sequences:

>Translated_282_residues
MHAPRALIAEDEPLLAQALRQELARAWPGLQIAATVGDGRSAVRQALELRPDVLWFDIRMPGLGGLEAALELADAWPLDA
APFPALVFVTAYDQYAVDAFEAQALDYLLKPVQAPRLLKTVQKIQAVLAARAAPHADAGGQGPCVPSRDEAGLEALLERL
RGLVPGTAAPSSGAAPLTVIQASSGPRIHFVPVADVLVFEAADKYVRVLTARQEYLIRTPLKELAAQLEPDVFWQIHRGT
LVRASGIESVERDESGRLHLRLRERPERLPVSRLHAHRFKAM
>Mature_282_residues
MHAPRALIAEDEPLLAQALRQELARAWPGLQIAATVGDGRSAVRQALELRPDVLWFDIRMPGLGGLEAALELADAWPLDA
APFPALVFVTAYDQYAVDAFEAQALDYLLKPVQAPRLLKTVQKIQAVLAARAAPHADAGGQGPCVPSRDEAGLEALLERL
RGLVPGTAAPSSGAAPLTVIQASSGPRIHFVPVADVLVFEAADKYVRVLTARQEYLIRTPLKELAAQLEPDVFWQIHRGT
LVRASGIESVERDESGRLHLRLRERPERLPVSRLHAHRFKAM

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=278, Percent_Identity=26.978417266187, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI87082052, Length=121, Percent_Identity=38.8429752066116, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 30756; Mature: 30756

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPRALIAEDEPLLAQALRQELARAWPGLQIAATVGDGRSAVRQALELRPDVLWFDIRM
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEEC
PGLGGLEAALELADAWPLDAAPFPALVFVTAYDQYAVDAFEAQALDYLLKPVQAPRLLKT
CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHH
VQKIQAVLAARAAPHADAGGQGPCVPSRDEAGLEALLERLRGLVPGTAAPSSGAAPLTVI
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
QASSGPRIHFVPVADVLVFEAADKYVRVLTARQEYLIRTPLKELAAQLEPDVFWQIHRGT
ECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCE
LVRASGIESVERDESGRLHLRLRERPERLPVSRLHAHRFKAM
EEEECCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MHAPRALIAEDEPLLAQALRQELARAWPGLQIAATVGDGRSAVRQALELRPDVLWFDIRM
CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEEC
PGLGGLEAALELADAWPLDAAPFPALVFVTAYDQYAVDAFEAQALDYLLKPVQAPRLLKT
CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHH
VQKIQAVLAARAAPHADAGGQGPCVPSRDEAGLEALLERLRGLVPGTAAPSSGAAPLTVI
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEE
QASSGPRIHFVPVADVLVFEAADKYVRVLTARQEYLIRTPLKELAAQLEPDVFWQIHRGT
ECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCE
LVRASGIESVERDESGRLHLRLRERPERLPVSRLHAHRFKAM
EEEECCCCHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA