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The map label for this gene is soxC [H]

Identifier: 120610689

GI number: 120610689

Start: 2184331

End: 2185566

Strand: Reverse

Name: soxC [H]

Synonym: Aave_2009

Alternate gene names: 120610689

Gene position: 2185566-2184331 (Counterclockwise)

Preceding gene: 120610690

Following gene: 120610688

Centisome position: 40.83

GC content: 73.14

Gene sequence:

>1236_bases
ATGACCGCACCGACTCCACACCACCGGCTGCCGCTGCCGCCGCGTACGCCGCACCGCATCGCCAGCGAGGCCGAGGCACT
CGACATCGCCCGCGCGCTGGCGCGCGAATTCCGCCAGGACGCGGCATCGCGCGACCGCGAGCGCCGCCTGCCCTGGGACG
AGATCGAGCGCTACACCGCGAGCGGCCTCGGCGGCATCGGCGTGCCGCGCGCCCACGGCGGCATCGGCGCCTCGTTCCGC
ACGCTGGCGGAGGTATTCGCCATCCTGTGCGCGGCCGATCCGTCGCTGGGGCAGATTCCGCAGAACCACCATGCGCTCAT
CCGCCACCTGGTGGAGTTCGGCAGCCCGTCGCTGCAGCGCCGCATTTTCGCGGACGTACTGGCGGGGCACCGGCTGGGCA
ATGCCGGCCCGGAGCGCAAGGCCCGCGCGGCCGCCGTCCACCATGCGACGGCGCGGCTGCGGCGGGATGCGCAGGGAACG
CTGCGCGCCAGCGGCACGCGCCACTATTCCACCGGGGCGCTGTTCGCGCACTGGGTGCCCTTCCGCGCGCAGGACGAGTC
CGGCCGCCCGGTGCAGGTCTGGGTGCGCCGCACGGCGCCCGGGCTGCAGGTGATCGACGACTGGGACGCCTTCGGCCAGC
GCACCACGGCCAGCGGCAGCGTCGTGCTGCAGGACGTGCCCGTGGAGGATGGCGACGTGGTCGCCCTCCACGCATCGCAG
GACCGGCCCACGCTGACGGGGCCGTTCTCGCAACTGCTGCAGGCCTCCATCGACCTGGGAATCGCCGAGGGTGCCCTGGA
GGACGCCCTCGCCTACGTGCGCGAGAAAACCCGGCCCTGGGTGGACTCCGGCGTGGAACACGCCCACGACGATCCGCACA
TCCTGCGCGAGGTCGGCGAACTGGCCATCGACGTGCATGCGGCGCGCGAAGTGCTGGCCGAGGCCGCTGACCTGCTGGAT
GCAGCAGCCCAGGCACCGCTCACGGACGCCGCCAGCGCCGAGGCCTCGGTGGCGGTCGCGCGCGCGAAGGTGCTGACCAC
GGAGGCCGCGCTGCACGCCGGTGAACACCTGCTGGAACTGGCCGGCGCCTCGGCATCGCGCACCGTCCACAACCTGGACC
GGCACTGGCGCAATGCGCGTGTCCACACGCTGCACGACCCCGTGCGCTGGAAATACCACCTCATCGGCCGCTACGTGCTG
AACGGCCAGGCGCCGCGCCGCCACCAGTGGAACTGA

Upstream 100 bases:

>100_bases
CGTCGAGCGCGGCTGAAACGCATAAGCTAGTCTGGAAATCTTCGTTCCCTTGCGGCGGGGACCGTCATGAGAATGGCCCA
TGACCGCCCCAGGGCCGAAG

Downstream 100 bases:

>100_bases
CCAAAGACCGCCCATGACCGCACACACCCCGCAGGAACGGCACTCCCTGCAGCAGGCAGGCCCCACCCCGCCGGCATCGC
CGGTGCCGCCGGCGCCCGCG

Product: acyl-CoA dehydrogenase type 2

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 411; Mature: 410

Protein sequence:

>411_residues
MTAPTPHHRLPLPPRTPHRIASEAEALDIARALAREFRQDAASRDRERRLPWDEIERYTASGLGGIGVPRAHGGIGASFR
TLAEVFAILCAADPSLGQIPQNHHALIRHLVEFGSPSLQRRIFADVLAGHRLGNAGPERKARAAAVHHATARLRRDAQGT
LRASGTRHYSTGALFAHWVPFRAQDESGRPVQVWVRRTAPGLQVIDDWDAFGQRTTASGSVVLQDVPVEDGDVVALHASQ
DRPTLTGPFSQLLQASIDLGIAEGALEDALAYVREKTRPWVDSGVEHAHDDPHILREVGELAIDVHAAREVLAEAADLLD
AAAQAPLTDAASAEASVAVARAKVLTTEAALHAGEHLLELAGASASRTVHNLDRHWRNARVHTLHDPVRWKYHLIGRYVL
NGQAPRRHQWN

Sequences:

>Translated_411_residues
MTAPTPHHRLPLPPRTPHRIASEAEALDIARALAREFRQDAASRDRERRLPWDEIERYTASGLGGIGVPRAHGGIGASFR
TLAEVFAILCAADPSLGQIPQNHHALIRHLVEFGSPSLQRRIFADVLAGHRLGNAGPERKARAAAVHHATARLRRDAQGT
LRASGTRHYSTGALFAHWVPFRAQDESGRPVQVWVRRTAPGLQVIDDWDAFGQRTTASGSVVLQDVPVEDGDVVALHASQ
DRPTLTGPFSQLLQASIDLGIAEGALEDALAYVREKTRPWVDSGVEHAHDDPHILREVGELAIDVHAAREVLAEAADLLD
AAAQAPLTDAASAEASVAVARAKVLTTEAALHAGEHLLELAGASASRTVHNLDRHWRNARVHTLHDPVRWKYHLIGRYVL
NGQAPRRHQWN
>Mature_410_residues
TAPTPHHRLPLPPRTPHRIASEAEALDIARALAREFRQDAASRDRERRLPWDEIERYTASGLGGIGVPRAHGGIGASFRT
LAEVFAILCAADPSLGQIPQNHHALIRHLVEFGSPSLQRRIFADVLAGHRLGNAGPERKARAAAVHHATARLRRDAQGTL
RASGTRHYSTGALFAHWVPFRAQDESGRPVQVWVRRTAPGLQVIDDWDAFGQRTTASGSVVLQDVPVEDGDVVALHASQD
RPTLTGPFSQLLQASIDLGIAEGALEDALAYVREKTRPWVDSGVEHAHDDPHILREVGELAIDVHAAREVLAEAADLLDA
AAQAPLTDAASAEASVAVARAKVLTTEAALHAGEHLLELAGASASRTVHNLDRHWRNARVHTLHDPVRWKYHLIGRYVLN
GQAPRRHQWN

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 44863; Mature: 44732

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPTPHHRLPLPPRTPHRIASEAEALDIARALAREFRQDAASRDRERRLPWDEIERYTA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SGLGGIGVPRAHGGIGASFRTLAEVFAILCAADPSLGQIPQNHHALIRHLVEFGSPSLQR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
RIFADVLAGHRLGNAGPERKARAAAVHHATARLRRDAQGTLRASGTRHYSTGALFAHWVP
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCC
FRAQDESGRPVQVWVRRTAPGLQVIDDWDAFGQRTTASGSVVLQDVPVEDGDVVALHASQ
CCCCCCCCCCEEEEEECCCCCCEEEECHHHHCCCCCCCCCEEEEECCCCCCCEEEEECCC
DRPTLTGPFSQLLQASIDLGIAEGALEDALAYVREKTRPWVDSGVEHAHDDPHILREVGE
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHCCHHCCCCHHHHHHHHH
LAIDVHAAREVLAEAADLLDAAAQAPLTDAASAEASVAVARAKVLTTEAALHAGEHLLEL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGASASRTVHNLDRHWRNARVHTLHDPVRWKYHLIGRYVLNGQAPRRHQWN
HCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHEECCCCCCCCCCC
>Mature Secondary Structure 
TAPTPHHRLPLPPRTPHRIASEAEALDIARALAREFRQDAASRDRERRLPWDEIERYTA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SGLGGIGVPRAHGGIGASFRTLAEVFAILCAADPSLGQIPQNHHALIRHLVEFGSPSLQR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHH
RIFADVLAGHRLGNAGPERKARAAAVHHATARLRRDAQGTLRASGTRHYSTGALFAHWVP
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCC
FRAQDESGRPVQVWVRRTAPGLQVIDDWDAFGQRTTASGSVVLQDVPVEDGDVVALHASQ
CCCCCCCCCCEEEEEECCCCCCEEEECHHHHCCCCCCCCCEEEEECCCCCCCEEEEECCC
DRPTLTGPFSQLLQASIDLGIAEGALEDALAYVREKTRPWVDSGVEHAHDDPHILREVGE
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHCCHHCCCCHHHHHHHHH
LAIDVHAAREVLAEAADLLDAAAQAPLTDAASAEASVAVARAKVLTTEAALHAGEHLLEL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGASASRTVHNLDRHWRNARVHTLHDPVRWKYHLIGRYVLNGQAPRRHQWN
HCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]