Click here to switch to the map view.

The map label for this gene is soxC [H]

Identifier: 120610688

GI number: 120610688

Start: 2183040

End: 2184317

Strand: Reverse

Name: soxC [H]

Synonym: Aave_2008

Alternate gene names: 120610688

Gene position: 2184317-2183040 (Counterclockwise)

Preceding gene: 120610689

Following gene: 120610687

Centisome position: 40.81

GC content: 74.02

Gene sequence:

>1278_bases
ATGACCGCACACACCCCGCAGGAACGGCACTCCCTGCAGCAGGCAGGCCCCACCCCGCCGGCATCGCCGGTGCCGCCGGC
GCCCGCGCACCGGCCGCCGGTGCTGGACACGCCCGCACAGATCCTCGGCACCGCCGCCGCGCTCGCCCGCGCATGGGCGC
CCCAGGCGCTGGCGCGCGACCGGGAGCGCCGGCTGCCCTGGACGGAAATCGAGGCCTACAGTGCCAGCGGGCTCTGGGGC
ATCACCGTGCCGCTGGCCCACGGCGGTCCGGGCGCCGACGCCTGGACGCTCGCGCAGACCATCGCCACGGTCTCCGCGGC
GGACGGATCGCTGGGCCACATCCCGCAGAACCATTTCCACGCCCTCGAAGTGCTGCGCGTGGGCGGCACCGAAGCCCAGC
AGCGCTTCTTCCACGGGCGCGTGCTGCAGGGCGAGCGCTTCGGCAACGCCCTGTCCGAAACCGGCCACCGGGACTACCGG
CGCCGCACCCGCCTGGAGCGCTCGGGCAGCGGCTGGGTGCTGCACGGGCGCAAGTCCTACTGCACCGGCGCGATCTTCGC
GCACTGGATTCCCACGCAGGCGATGCAGCAGTTCCATGATGGCCGCGAGGTGAGCGTGATCGCCTTCGTGCCGCGCCATG
CCCCCGGCATCACGGTGGAGGACGACTGGGACGGCATGGGCCAGCGCGTGACGGGCAGCGGATCGGTCGCGCTGGACGGC
GTGCCGGTGCAGCCCGAATGGATCGTGCCGTTCCAGGCCAGCTTCGACCGGCCCACGGCCATCGGACCGTTCGCGCAGCT
CATGCACGCGGCCATCGACCTCGGGATTGGCGAAGGGGCGCTGCAGGCCGCCCTGCCCTTCATCCGCGACCACGCGCGCC
CCTGGATCGACGCGCAGGTGGAGCGCGCCACGGACGACCCGCTCACCCTGCACGCCGTGGGCGAGGTGGACCTGCGCCTG
CGCGCGGCCCGCGCGATGCTGCGCCGGGCGGCGCGCTTCGTCGATGCCGCCCGGCACGCTCCCGATGAAGACACGGTGGC
CGCCGCTTCGGTGGCCGTGGCCGAGGCCCGCGCGCTCGCCCACCGCGCTGGCCTGCTGGCTGCCAACAAGCTGCTGGAAC
TGGGCGGCACCTCCGCCACCGCCGCGGAACACGGCTTCGACCGCTTCTGGCGCAACGTGCGCACCCACACGCTGCACGAT
CCGGTGCGGTGGAAGTACCACGCCGTGGGCAACCATGTGCTCAACGGCACCCGGCCGCCGCGCCACGGAGCCCTGTGA

Upstream 100 bases:

>100_bases
CTGCACGACCCCGTGCGCTGGAAATACCACCTCATCGGCCGCTACGTGCTGAACGGCCAGGCGCCGCGCCGCCACCAGTG
GAACTGACCAAAGACCGCCC

Downstream 100 bases:

>100_bases
TGCCCGGCGCGCACCGCACACGCCCAATCGTCCTCAACGCGTTCAGCATGAACACGGTGGGGCACATCAACCACGGCCTC
TGGACGCATCCCCGCGACCG

Product: acyl-CoA dehydrogenase type 2

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MTAHTPQERHSLQQAGPTPPASPVPPAPAHRPPVLDTPAQILGTAAALARAWAPQALARDRERRLPWTEIEAYSASGLWG
ITVPLAHGGPGADAWTLAQTIATVSAADGSLGHIPQNHFHALEVLRVGGTEAQQRFFHGRVLQGERFGNALSETGHRDYR
RRTRLERSGSGWVLHGRKSYCTGAIFAHWIPTQAMQQFHDGREVSVIAFVPRHAPGITVEDDWDGMGQRVTGSGSVALDG
VPVQPEWIVPFQASFDRPTAIGPFAQLMHAAIDLGIGEGALQAALPFIRDHARPWIDAQVERATDDPLTLHAVGEVDLRL
RAARAMLRRAARFVDAARHAPDEDTVAAASVAVAEARALAHRAGLLAANKLLELGGTSATAAEHGFDRFWRNVRTHTLHD
PVRWKYHAVGNHVLNGTRPPRHGAL

Sequences:

>Translated_425_residues
MTAHTPQERHSLQQAGPTPPASPVPPAPAHRPPVLDTPAQILGTAAALARAWAPQALARDRERRLPWTEIEAYSASGLWG
ITVPLAHGGPGADAWTLAQTIATVSAADGSLGHIPQNHFHALEVLRVGGTEAQQRFFHGRVLQGERFGNALSETGHRDYR
RRTRLERSGSGWVLHGRKSYCTGAIFAHWIPTQAMQQFHDGREVSVIAFVPRHAPGITVEDDWDGMGQRVTGSGSVALDG
VPVQPEWIVPFQASFDRPTAIGPFAQLMHAAIDLGIGEGALQAALPFIRDHARPWIDAQVERATDDPLTLHAVGEVDLRL
RAARAMLRRAARFVDAARHAPDEDTVAAASVAVAEARALAHRAGLLAANKLLELGGTSATAAEHGFDRFWRNVRTHTLHD
PVRWKYHAVGNHVLNGTRPPRHGAL
>Mature_424_residues
TAHTPQERHSLQQAGPTPPASPVPPAPAHRPPVLDTPAQILGTAAALARAWAPQALARDRERRLPWTEIEAYSASGLWGI
TVPLAHGGPGADAWTLAQTIATVSAADGSLGHIPQNHFHALEVLRVGGTEAQQRFFHGRVLQGERFGNALSETGHRDYRR
RTRLERSGSGWVLHGRKSYCTGAIFAHWIPTQAMQQFHDGREVSVIAFVPRHAPGITVEDDWDGMGQRVTGSGSVALDGV
PVQPEWIVPFQASFDRPTAIGPFAQLMHAAIDLGIGEGALQAALPFIRDHARPWIDAQVERATDDPLTLHAVGEVDLRLR
AARAMLRRAARFVDAARHAPDEDTVAAASVAVAEARALAHRAGLLAANKLLELGGTSATAAEHGFDRFWRNVRTHTLHDP
VRWKYHAVGNHVLNGTRPPRHGAL

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4501859, Length=354, Percent_Identity=24.0112994350282, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508101, Length=389, Percent_Identity=23.9074550128535, Blast_Score=85, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71990804, Length=290, Percent_Identity=23.7931034482759, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24666513, Length=399, Percent_Identity=23.0576441102757, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 46034; Mature: 45903

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAHTPQERHSLQQAGPTPPASPVPPAPAHRPPVLDTPAQILGTAAALARAWAPQALARD
CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHH
RERRLPWTEIEAYSASGLWGITVPLAHGGPGADAWTLAQTIATVSAADGSLGHIPQNHFH
HHHCCCCHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ALEVLRVGGTEAQQRFFHGRVLQGERFGNALSETGHRDYRRRTRLERSGSGWVLHGRKSY
HHHHHHCCCCHHHHHHHHCCEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCH
CTGAIFAHWIPTQAMQQFHDGREVSVIAFVPRHAPGITVEDDWDGMGQRVTGSGSVALDG
HHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCEECCCCCCCCCEECCCCCEEECC
VPVQPEWIVPFQASFDRPTAIGPFAQLMHAAIDLGIGEGALQAALPFIRDHARPWIDAQV
CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHH
ERATDDPLTLHAVGEVDLRLRAARAMLRRAARFVDAARHAPDEDTVAAASVAVAEARALA
HCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
HRAGLLAANKLLELGGTSATAAEHGFDRFWRNVRTHTLHDPVRWKYHAVGNHVLNGTRPP
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHCCHHCCCCCCC
RHGAL
CCCCC
>Mature Secondary Structure 
TAHTPQERHSLQQAGPTPPASPVPPAPAHRPPVLDTPAQILGTAAALARAWAPQALARD
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHH
RERRLPWTEIEAYSASGLWGITVPLAHGGPGADAWTLAQTIATVSAADGSLGHIPQNHFH
HHHCCCCHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ALEVLRVGGTEAQQRFFHGRVLQGERFGNALSETGHRDYRRRTRLERSGSGWVLHGRKSY
HHHHHHCCCCHHHHHHHHCCEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCH
CTGAIFAHWIPTQAMQQFHDGREVSVIAFVPRHAPGITVEDDWDGMGQRVTGSGSVALDG
HHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCCCCCEECCCCCCCCCEECCCCCEEECC
VPVQPEWIVPFQASFDRPTAIGPFAQLMHAAIDLGIGEGALQAALPFIRDHARPWIDAQV
CCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHH
ERATDDPLTLHAVGEVDLRLRAARAMLRRAARFVDAARHAPDEDTVAAASVAVAEARALA
HCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
HRAGLLAANKLLELGGTSATAAEHGFDRFWRNVRTHTLHDPVRWKYHAVGNHVLNGTRPP
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHCCHHCCCCCCC
RHGAL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]