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The map label for this gene is rimM

Identifier: 120610565

GI number: 120610565

Start: 2041611

End: 2042186

Strand: Direct

Name: rimM

Synonym: Aave_1885

Alternate gene names: 120610565

Gene position: 2041611-2042186 (Clockwise)

Preceding gene: 120610564

Following gene: 120610566

Centisome position: 38.14

GC content: 69.44

Gene sequence:

>576_bases
ATGCCCGCCCTTCCCATCCTCGATCCCGCCGACCTGCCCGCCGACGCGGTGGAAGTAGGGCGCATCGCGGACGCCTGGGG
CGTCAAGGGCTGGTTCAAGGTGCTGCCCTACAGCGCCGATCCCGAAGCGCTGTTTTCCTCCAAGCGGTGGTACCTGCAGC
CCAGCGAGAAGGGCGCGAAGAGCTTTTTCACGGGAACCGTGCTGCTGCCCATCCGCCAGGCGCGCGAGCATTCCGACTCC
GTCGTCGCGCAGGCCCAGGGCGTGGACGACCGCGACGCCGCCGAGGCCCTGCGGGGCGCCCGCATCTTCGTGCCCCGCTC
GAGCTTTCCCACGGCGGCCGAGGACGAGTACTACTGGGTCGATCTCATCGGCCTGGAAGTGGTCAACCGCGAGGGCGTCG
CGCTGGGCTCCGTGCGCGAACTGCTCGCCACGGGGCCGCAGACGACCCTGGTGCTGTCGTTCCCGCAGGAGGGCGGCAAG
GAGGGCGAGCGCATGATTCCCTTCGTGTCCGCCTTCGTCGATCGGGTGGACATCGCCGGGCGCCGCATCGTGGTGGACTG
GCAGCCGGATTACTGA

Upstream 100 bases:

>100_bases
CGGTCAGTCGAGCCGGGAGATCCATCTTCCCGGAACGAGGCGGGCTCCGTTGCCACGGCAAACGGAGCCCGCTTTTTTTC
TTTTCATCCCTTTTTTCGCC

Downstream 100 bases:

>100_bases
GCCGCCATGCGTTTCGACGTCATCACGCTGTTCCCGGAGCTGTTCACGCCGTTTCTCGCCAGCGGCGTGACGCGACGGGC
CTATGCCACCGGGCTCGTGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MPALPILDPADLPADAVEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAKSFFTGTVLLPIRQAREHSDS
VVAQAQGVDDRDAAEALRGARIFVPRSSFPTAAEDEYYWVDLIGLEVVNREGVALGSVRELLATGPQTTLVLSFPQEGGK
EGERMIPFVSAFVDRVDIAGRRIVVDWQPDY

Sequences:

>Translated_191_residues
MPALPILDPADLPADAVEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAKSFFTGTVLLPIRQAREHSDS
VVAQAQGVDDRDAAEALRGARIFVPRSSFPTAAEDEYYWVDLIGLEVVNREGVALGSVRELLATGPQTTLVLSFPQEGGK
EGERMIPFVSAFVDRVDIAGRRIVVDWQPDY
>Mature_190_residues
PALPILDPADLPADAVEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAKSFFTGTVLLPIRQAREHSDSV
VAQAQGVDDRDAAEALRGARIFVPRSSFPTAAEDEYYWVDLIGLEVVNREGVALGSVRELLATGPQTTLVLSFPQEGGKE
GERMIPFVSAFVDRVDIAGRRIVVDWQPDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=184, Percent_Identity=30.9782608695652, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ACIAC (A1TND1)

Other databases:

- EMBL:   CP000512
- RefSeq:   YP_970243.1
- ProteinModelPortal:   A1TND1
- SMR:   A1TND1
- STRING:   A1TND1
- GeneID:   4665271
- GenomeReviews:   CP000512_GR
- KEGG:   aav:Aave_1885
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   A1TND1
- ProtClustDB:   PRK00122
- BioCyc:   AAVE397945:AAVE_1885-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 20990; Mature: 20859

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALPILDPADLPADAVEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAK
CCCCCCCCCCCCCHHHHHHHCHHHHHCCCCCHHCCCCCCCHHHHHCCCCEEECCCCCCCH
SFFTGTVLLPIRQAREHSDSVVAQAQGVDDRDAAEALRGARIFVPRSSFPTAAEDEYYWV
HHCCCEEEEECHHHHCCHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCEEEE
DLIGLEVVNREGVALGSVRELLATGPQTTLVLSFPQEGGKEGERMIPFVSAFVDRVDIAG
EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
RRIVVDWQPDY
CEEEEEECCCC
>Mature Secondary Structure 
PALPILDPADLPADAVEVGRIADAWGVKGWFKVLPYSADPEALFSSKRWYLQPSEKGAK
CCCCCCCCCCCCHHHHHHHCHHHHHCCCCCHHCCCCCCCHHHHHCCCCEEECCCCCCCH
SFFTGTVLLPIRQAREHSDSVVAQAQGVDDRDAAEALRGARIFVPRSSFPTAAEDEYYWV
HHCCCEEEEECHHHHCCHHHHHHHHCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCEEEE
DLIGLEVVNREGVALGSVRELLATGPQTTLVLSFPQEGGKEGERMIPFVSAFVDRVDIAG
EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
RRIVVDWQPDY
CEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA