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The map label for this gene is yeaT [C]

Identifier: 120610488

GI number: 120610488

Start: 1961520

End: 1962437

Strand: Direct

Name: yeaT [C]

Synonym: Aave_1807

Alternate gene names: 120610488

Gene position: 1961520-1962437 (Clockwise)

Preceding gene: 120610483

Following gene: 120610496

Centisome position: 36.64

GC content: 64.38

Gene sequence:

>918_bases
ATGGACCGTCTGACCGCTATGCGGGTGTTCGTGGAAGTCGTGGATCGCGGCAGCGTCAGCGCCGCTGCCGAGGCGATGGA
TATGTCGCGGGCCATGGCGAGCCGTTACCTCGAAGGCCTGGAAAACTGGCTGGGCGCAAGGCTGCTGCACCGCACCACGC
GGCGGATAACGCTGACGGACGCCGGGCAGACCTCGCTCGTGACCTGCCGGGAAATGCTCGTGTTGGCGAATGACGTCATG
GCGCAGGCGGGACAAGGAAGCACGCAGGCGCATGGTCGCCTGCGACTGACGTCGTCTTCTTCCTTCGCGATGGCCCAGCT
CACCGGCGCCGTGGTGGATTTCCAGGCACTGCACCCGAAGGTGGACATCGATCTGGTGATGGTGGACCGGACCGTGGATC
TGGTGCAGGAACGCATCGACCTCGCCGTCCGCCTGAGCAATGCCGTCGATCCGGTCCTCGTGGCGCGTCGACTGGCAAGT
TGCTACTCAGTGCTTTGCGCATCTCCTGCCTATCTTGAGCGCGCGGGTGCGCCAAAAACGCCGGAAGACTTGCAAGTGCA
TCAGTGCATCCTCCACAACGCCGGGTTCGCTCCGGAATATCGGCTTCGTCGTGCAGGCGAGTGGACAACCGTTGCCGTGC
GCGGCGCGATCACCGCTAACGAAACATCGGTGGTGCGAGCGGCGGCGCTGGCGGGCGCAGGCATCGCCATGCTGCCCACT
TACTTCGTGGGCGATTCATTGGCGGACGGGACCTTGCGGAAGGTGCTGCCGGAGTATGCGCTGGAGCCACTGGACATTCA
GGCTGTGTACCTATCGCGGCGCCATCAACCTCTGCCACTCAGGCTTCTGATCGACTTCCTCGCGGATCGCTTCGGCGGTG
AAGTCGCACCATGGGACCGCCTTCCGCTCCCGGCGTGA

Upstream 100 bases:

>100_bases
GGATGAAGCAGCGTTGCTGCGATGGGATGAACTGTATTAGTCGCTTGCGCAGAGATAAACTCCGGTTTAATTGAATGTTT
GTCAACTGATTCGAGCAGGC

Downstream 100 bases:

>100_bases
CAGACACGATCTTCCCGCTTTACTGTCTTCGTGAGTTACCAGTAGCCATCGAAGCGCTTCAGAAATGGCCGCTGTTTGCT
TAGCCATCTCCCGGATTTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDRLTAMRVFVEVVDRGSVSAAAEAMDMSRAMASRYLEGLENWLGARLLHRTTRRITLTDAGQTSLVTCREMLVLANDVM
AQAGQGSTQAHGRLRLTSSSSFAMAQLTGAVVDFQALHPKVDIDLVMVDRTVDLVQERIDLAVRLSNAVDPVLVARRLAS
CYSVLCASPAYLERAGAPKTPEDLQVHQCILHNAGFAPEYRLRRAGEWTTVAVRGAITANETSVVRAAALAGAGIAMLPT
YFVGDSLADGTLRKVLPEYALEPLDIQAVYLSRRHQPLPLRLLIDFLADRFGGEVAPWDRLPLPA

Sequences:

>Translated_305_residues
MDRLTAMRVFVEVVDRGSVSAAAEAMDMSRAMASRYLEGLENWLGARLLHRTTRRITLTDAGQTSLVTCREMLVLANDVM
AQAGQGSTQAHGRLRLTSSSSFAMAQLTGAVVDFQALHPKVDIDLVMVDRTVDLVQERIDLAVRLSNAVDPVLVARRLAS
CYSVLCASPAYLERAGAPKTPEDLQVHQCILHNAGFAPEYRLRRAGEWTTVAVRGAITANETSVVRAAALAGAGIAMLPT
YFVGDSLADGTLRKVLPEYALEPLDIQAVYLSRRHQPLPLRLLIDFLADRFGGEVAPWDRLPLPA
>Mature_305_residues
MDRLTAMRVFVEVVDRGSVSAAAEAMDMSRAMASRYLEGLENWLGARLLHRTTRRITLTDAGQTSLVTCREMLVLANDVM
AQAGQGSTQAHGRLRLTSSSSFAMAQLTGAVVDFQALHPKVDIDLVMVDRTVDLVQERIDLAVRLSNAVDPVLVARRLAS
CYSVLCASPAYLERAGAPKTPEDLQVHQCILHNAGFAPEYRLRRAGEWTTVAVRGAITANETSVVRAAALAGAGIAMLPT
YFVGDSLADGTLRKVLPEYALEPLDIQAVYLSRRHQPLPLRLLIDFLADRFGGEVAPWDRLPLPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=33.1034482758621, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=32.5423728813559, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=32.5581395348837, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1789440, Length=284, Percent_Identity=30.2816901408451, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=29.757785467128, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=30.6896551724138, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787128, Length=280, Percent_Identity=28.2142857142857, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789173, Length=249, Percent_Identity=26.9076305220884, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788748, Length=170, Percent_Identity=30.5882352941176, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33235; Mature: 33235

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLTAMRVFVEVVDRGSVSAAAEAMDMSRAMASRYLEGLENWLGARLLHRTTRRITLTD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC
AGQTSLVTCREMLVLANDVMAQAGQGSTQAHGRLRLTSSSSFAMAQLTGAVVDFQALHPK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
VDIDLVMVDRTVDLVQERIDLAVRLSNAVDPVLVARRLASCYSVLCASPAYLERAGAPKT
CCEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PEDLQVHQCILHNAGFAPEYRLRRAGEWTTVAVRGAITANETSVVRAAALAGAGIAMLPT
CHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCHHHHHH
YFVGDSLADGTLRKVLPEYALEPLDIQAVYLSRRHQPLPLRLLIDFLADRFGGEVAPWDR
HHHCCCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCC
LPLPA
CCCCC
>Mature Secondary Structure
MDRLTAMRVFVEVVDRGSVSAAAEAMDMSRAMASRYLEGLENWLGARLLHRTTRRITLTD
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC
AGQTSLVTCREMLVLANDVMAQAGQGSTQAHGRLRLTSSSSFAMAQLTGAVVDFQALHPK
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC
VDIDLVMVDRTVDLVQERIDLAVRLSNAVDPVLVARRLASCYSVLCASPAYLERAGAPKT
CCEEEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PEDLQVHQCILHNAGFAPEYRLRRAGEWTTVAVRGAITANETSVVRAAALAGAGIAMLPT
CHHHHHHHHHHHCCCCCCCHHHHCCCCEEEEEEEEEEECCCHHHHHHHHHHCCCHHHHHH
YFVGDSLADGTLRKVLPEYALEPLDIQAVYLSRRHQPLPLRLLIDFLADRFGGEVAPWDR
HHHCCCCCCHHHHHHHHHHCCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCC
LPLPA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]