Click here to switch to the map view.

The map label for this gene is sohB [C]

Identifier: 120610301

GI number: 120610301

Start: 1780770

End: 1781720

Strand: Direct

Name: sohB [C]

Synonym: Aave_1618

Alternate gene names: 120610301

Gene position: 1780770-1781720 (Clockwise)

Preceding gene: 120610300

Following gene: 120610302

Centisome position: 33.27

GC content: 66.56

Gene sequence:

>951_bases
ATGAAAAGCTATCTCCGTGCCTCCGGCCTACTGTTCAACCAGCCGCTGATGGTCACTCCCGACGTGCTGGAGCTCGGCGT
ACGCTGGGCCAACCAGGTGATGAACCTCAACATCATCAACCTCGGGCCCAGCGCGGCGCCCGCGATGCGCATGGATGACA
ACGAAGGCAGTGCTGCGCAAATGCGGGAACCGGACACCGACCGCCGCGGACCGCCCTCGACAGGCGTGGCCGTCATCCCG
GTGCATGGCGTGCTGGTCCCTCGCACCGCCAATCTCGAGATGTGCGAGACGATGACCAGCTACGAAGGGTTGCGCCGCGA
CATCCGCGCCGCGATCAACGATCCTACGATCGAGCGCATCGCACTGGACATCGACAGCCCAGGCGGTTCGGTGGCGGGCG
CCTTCGAGCTGGCCACCGACATCCGTGCGATGTCGGCGCAGAAGCCCATCACGGGTGTGGTCAATTTCATGGGCTACAGC
GGCGGCTACCTGATCGCCTCGGCCTGCAGCGAGATCGTGGTCAGCCGCACCAGCGGCGTGGGCTCTATCGGCGTGATCGC
CAGCCACATGGACCGCGCGGCCCTGAACGAGAAGCTGGGGGTGAAAGTCACGACCGTGTTCGCGGGCGCGCACAAGAACG
ACCTTACGCCGCACGAACCGATCAGCGAGCAATCGCTGCGTGTGCTGACCGACCTGGTCAACGAAGGCTATGAGATGTTC
GTCAGCGCCGTGGCGGAGTACCGCGGCATGACCGCGGCGGCAGTGCGTGCCACCGAAGCAGGGCTCTACCGGGGCGACGC
CGCCATCAAGGCGGGCCTGGCTGATCGCCTGCAGAGCCCGCAAGACGCGATCGATGGCATCGCGCATGCGGTCGCCAGCG
ACCGCGCGCGGCGCAGCGGGCCACGCATCGGCGTGCGTGCTGCGGCGCTGCAGATCCAGTCCCAACTCTGA

Upstream 100 bases:

>100_bases
TGATCGACCCGACCAAGGGCGTTCTTCCCTCGGCCCTCACGCCCCATGCGCGCGCCGAGCTCGAGGCGCAGATGGAATAC
ATCGGAAAGGTGTTGCAAGC

Downstream 100 bases:

>100_bases
CCGCGTTCGCGGCAGCAACCCACGGCCCGCTCAGCGGGCTTTTTTTTGCCCCAAGGAGGCATCAATGTCCCAAGTGCTGA
AACTGCGCAGCGAACGCGCC

Product: serine peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MKSYLRASGLLFNQPLMVTPDVLELGVRWANQVMNLNIINLGPSAAPAMRMDDNEGSAAQMREPDTDRRGPPSTGVAVIP
VHGVLVPRTANLEMCETMTSYEGLRRDIRAAINDPTIERIALDIDSPGGSVAGAFELATDIRAMSAQKPITGVVNFMGYS
GGYLIASACSEIVVSRTSGVGSIGVIASHMDRAALNEKLGVKVTTVFAGAHKNDLTPHEPISEQSLRVLTDLVNEGYEMF
VSAVAEYRGMTAAAVRATEAGLYRGDAAIKAGLADRLQSPQDAIDGIAHAVASDRARRSGPRIGVRAAALQIQSQL

Sequences:

>Translated_316_residues
MKSYLRASGLLFNQPLMVTPDVLELGVRWANQVMNLNIINLGPSAAPAMRMDDNEGSAAQMREPDTDRRGPPSTGVAVIP
VHGVLVPRTANLEMCETMTSYEGLRRDIRAAINDPTIERIALDIDSPGGSVAGAFELATDIRAMSAQKPITGVVNFMGYS
GGYLIASACSEIVVSRTSGVGSIGVIASHMDRAALNEKLGVKVTTVFAGAHKNDLTPHEPISEQSLRVLTDLVNEGYEMF
VSAVAEYRGMTAAAVRATEAGLYRGDAAIKAGLADRLQSPQDAIDGIAHAVASDRARRSGPRIGVRAAALQIQSQL
>Mature_316_residues
MKSYLRASGLLFNQPLMVTPDVLELGVRWANQVMNLNIINLGPSAAPAMRMDDNEGSAAQMREPDTDRRGPPSTGVAVIP
VHGVLVPRTANLEMCETMTSYEGLRRDIRAAINDPTIERIALDIDSPGGSVAGAFELATDIRAMSAQKPITGVVNFMGYS
GGYLIASACSEIVVSRTSGVGSIGVIASHMDRAALNEKLGVKVTTVFAGAHKNDLTPHEPISEQSLRVLTDLVNEGYEMF
VSAVAEYRGMTAAAVRATEAGLYRGDAAIKAGLADRLQSPQDAIDGIAHAVASDRARRSGPRIGVRAAALQIQSQL

Specific function: Multicopy Suppressor Of The Htra (Degp) Null Phenotype. It Is Possibly A Protease, Not Essential For Bacterial VIability. [C]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=205, Percent_Identity=27.8048780487805, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004635
- InterPro:   IPR002142 [H]

Pfam domain/function: PF01343 Peptidase_S49 [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 33484; Mature: 33484

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSYLRASGLLFNQPLMVTPDVLELGVRWANQVMNLNIINLGPSAAPAMRMDDNEGSAAQ
CCCHHHHCCEEECCCCEECHHHHHHHHHHHHHHHEEEEEEECCCCCCCCEECCCCCCCCC
MREPDTDRRGPPSTGVAVIPVHGVLVPRTANLEMCETMTSYEGLRRDIRAAINDPTIERI
CCCCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ALDIDSPGGSVAGAFELATDIRAMSAQKPITGVVNFMGYSGGYLIASACSEIVVSRTSGV
EEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
GSIGVIASHMDRAALNEKLGVKVTTVFAGAHKNDLTPHEPISEQSLRVLTDLVNEGYEMF
CHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VSAVAEYRGMTAAAVRATEAGLYRGDAAIKAGLADRLQSPQDAIDGIAHAVASDRARRSG
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
PRIGVRAAALQIQSQL
CCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKSYLRASGLLFNQPLMVTPDVLELGVRWANQVMNLNIINLGPSAAPAMRMDDNEGSAAQ
CCCHHHHCCEEECCCCEECHHHHHHHHHHHHHHHEEEEEEECCCCCCCCEECCCCCCCCC
MREPDTDRRGPPSTGVAVIPVHGVLVPRTANLEMCETMTSYEGLRRDIRAAINDPTIERI
CCCCCCCCCCCCCCCEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
ALDIDSPGGSVAGAFELATDIRAMSAQKPITGVVNFMGYSGGYLIASACSEIVVSRTSGV
EEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
GSIGVIASHMDRAALNEKLGVKVTTVFAGAHKNDLTPHEPISEQSLRVLTDLVNEGYEMF
CHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VSAVAEYRGMTAAAVRATEAGLYRGDAAIKAGLADRLQSPQDAIDGIAHAVASDRARRSG
HHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
PRIGVRAAALQIQSQL
CCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]