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The map label for this gene is ymfN [H]

Identifier: 120610299

GI number: 120610299

Start: 1777625

End: 1779316

Strand: Direct

Name: ymfN [H]

Synonym: Aave_1616

Alternate gene names: 120610299

Gene position: 1777625-1779316 (Clockwise)

Preceding gene: 120610298

Following gene: 120610300

Centisome position: 33.21

GC content: 64.95

Gene sequence:

>1692_bases
GTGCGGGGCGCTGCGCAGCGCCACCTCGATGACTTGCTCACGGGCCACTTGCGCGGCCTGGTCTGGCGACAGGACCTGGC
CGACCGTGCTCTCGGGTTCTTCGAAGACGTGCTCAAGCTCAATGGCGGCGAGTACGAAGCAAAGCCGTTTCTGCTGGCGC
CCTGGCAGGCGTTTGTGGTGGGCAGCATCTTCGGCTGGTACACGCAAGACGGTTTCCGGCGCTTCAGCATCGCCTACATC
GAGACCGGAAAGGGCTCGGGCAAGTCGCCACTCGCAGCTGGCATCGGGCTGTACGGTCTCACCGCCGACGGTGAGCAGCG
CGCCGAGGTCTATGCGGCCGCGACGAAGCGCGACCAGGCGCAGATCCTGTTCCGTGATGCGGTCAGCATGGTCAACCTGT
CGCCCATGCTTCAGTCGCGGCTGGTGCAGTCGGGGCGCGACGAGAAGGTCTGGAACCTTTTCTACCCGGCTACCAACGGC
TTCTTTCGGACCATTGCATCGGACGAAGGCCAGTCGGGACCGCGCCCTCACATCGGGCTGATAGACGAGGTGCACGAGCA
CACCACGTCCACCGTGGTCGAGATGATGCTGGCGGGCCGCAAGAGCCGCCGCCGCGCCCTGGTGCTGATGATTACCAACA
GTGGCAGCGACCTGAACACGGTGTGCGGCCAGTACCACGAACTGGGTATCAAGGTATGCCGGGGCGAGCTGGTGAACGAC
GCGATATTCGCGTTCATCTGCGCGCTGGACGAAGGCGAGGATCCGTTCAAGGATGAGGCCTGCTGGGCGAAGGTGAACCC
GAGTCTGGACTACAAGGCGCACGGCCAGACGGATGGCATCCCGGGGCGGCGCTACCTCCGCGAGCAGGTGCACACCGCGC
GCGGCGTGCCGGCAAAGGAGGCGGTTGTGCGGCGCCTCAACTTCTGCCAGTGGACGCAGGCGGAGTCGCCCTGGATCGGC
TGGGATGTGTGGAAGGACGCACAGGAGCGTGTGCCGCTGTCGCTGCTGCGCAACCGCCCGGCGGTCGCCGGGCTGGACCT
GTCCAGCACCACCGACCTCACCGCGTTCGTGCTGCTTTTCTACCCCACGGTGGCCGATCCCCACTGGCGACTGATGCCGT
ACTTCTGGATACCGGACCACGACATCGAGGGGCGAGAAGAGCGAGACCGCGTGCCCTACACCGTGTGGATTAAAGAGAAA
TGGCTGGAGACCACGCCGGGCCGCGCCATCAGCAAGTTGCATGTGCTGCGGCGGTTGCAGTCGATCTGCGGCCACTTCCA
GGTGCTCAAGATCGCGTACGACCGCTGGCGCATCGAAGACTTGCAGCAGTTGATGGTTGAGCACGGCATCGAGCTGCCGC
CGCTTGAGAAGTTCGGCCAGGGCTACCAGGACATGGCGCCCGCCGTCGATGAGTTCGAACGGCGCCTGCTTGGCATCGTG
GAGGTGGACGACGCAGGCGAGCCGGTGGCTACCGAAGTCGAAACGCTCCGACACGACGGTAATCCGGTGATGACCTGGTG
CGCCGGCAACGCTGTGACGACAAGCGACCCGGCCAACAACCGCAAGGTGGACAAAGCGAAATCTAGGGGCCGTATCGATG
GCATCGTGGCTGCGTTGGAGGCCACCGGTGTCAGCGCTGGCGGCAGGCCGGCCGGTGCGCGGTCCATTTACGACGAGGGG
GTAGGAATATGA

Upstream 100 bases:

>100_bases
AATGACCACAAGGAGGCCGCCGCCCGATACTTCTCACACTGATCGGGTAGCGGCGTTCTGCCGTTCGGTGCTGGATGGCG
AGATCGTTTCAGGACCGCAC

Downstream 100 bases:

>100_bases
ATCTGCGCACGCTGTCCTGGCTGTTCGGGCTGGTGGGGTTCGTGGTGCTGATCGTTGGCGTGGCTCTTATTCACGTTCCG
GCCGCCTGCATCGTGGCCGG

Product: phage terminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MRGAAQRHLDDLLTGHLRGLVWRQDLADRALGFFEDVLKLNGGEYEAKPFLLAPWQAFVVGSIFGWYTQDGFRRFSIAYI
ETGKGSGKSPLAAGIGLYGLTADGEQRAEVYAAATKRDQAQILFRDAVSMVNLSPMLQSRLVQSGRDEKVWNLFYPATNG
FFRTIASDEGQSGPRPHIGLIDEVHEHTTSTVVEMMLAGRKSRRRALVLMITNSGSDLNTVCGQYHELGIKVCRGELVND
AIFAFICALDEGEDPFKDEACWAKVNPSLDYKAHGQTDGIPGRRYLREQVHTARGVPAKEAVVRRLNFCQWTQAESPWIG
WDVWKDAQERVPLSLLRNRPAVAGLDLSSTTDLTAFVLLFYPTVADPHWRLMPYFWIPDHDIEGREERDRVPYTVWIKEK
WLETTPGRAISKLHVLRRLQSICGHFQVLKIAYDRWRIEDLQQLMVEHGIELPPLEKFGQGYQDMAPAVDEFERRLLGIV
EVDDAGEPVATEVETLRHDGNPVMTWCAGNAVTTSDPANNRKVDKAKSRGRIDGIVAALEATGVSAGGRPAGARSIYDEG
VGI

Sequences:

>Translated_563_residues
MRGAAQRHLDDLLTGHLRGLVWRQDLADRALGFFEDVLKLNGGEYEAKPFLLAPWQAFVVGSIFGWYTQDGFRRFSIAYI
ETGKGSGKSPLAAGIGLYGLTADGEQRAEVYAAATKRDQAQILFRDAVSMVNLSPMLQSRLVQSGRDEKVWNLFYPATNG
FFRTIASDEGQSGPRPHIGLIDEVHEHTTSTVVEMMLAGRKSRRRALVLMITNSGSDLNTVCGQYHELGIKVCRGELVND
AIFAFICALDEGEDPFKDEACWAKVNPSLDYKAHGQTDGIPGRRYLREQVHTARGVPAKEAVVRRLNFCQWTQAESPWIG
WDVWKDAQERVPLSLLRNRPAVAGLDLSSTTDLTAFVLLFYPTVADPHWRLMPYFWIPDHDIEGREERDRVPYTVWIKEK
WLETTPGRAISKLHVLRRLQSICGHFQVLKIAYDRWRIEDLQQLMVEHGIELPPLEKFGQGYQDMAPAVDEFERRLLGIV
EVDDAGEPVATEVETLRHDGNPVMTWCAGNAVTTSDPANNRKVDKAKSRGRIDGIVAALEATGVSAGGRPAGARSIYDEG
VGI
>Mature_563_residues
MRGAAQRHLDDLLTGHLRGLVWRQDLADRALGFFEDVLKLNGGEYEAKPFLLAPWQAFVVGSIFGWYTQDGFRRFSIAYI
ETGKGSGKSPLAAGIGLYGLTADGEQRAEVYAAATKRDQAQILFRDAVSMVNLSPMLQSRLVQSGRDEKVWNLFYPATNG
FFRTIASDEGQSGPRPHIGLIDEVHEHTTSTVVEMMLAGRKSRRRALVLMITNSGSDLNTVCGQYHELGIKVCRGELVND
AIFAFICALDEGEDPFKDEACWAKVNPSLDYKAHGQTDGIPGRRYLREQVHTARGVPAKEAVVRRLNFCQWTQAESPWIG
WDVWKDAQERVPLSLLRNRPAVAGLDLSSTTDLTAFVLLFYPTVADPHWRLMPYFWIPDHDIEGREERDRVPYTVWIKEK
WLETTPGRAISKLHVLRRLQSICGHFQVLKIAYDRWRIEDLQQLMVEHGIELPPLEKFGQGYQDMAPAVDEFERRLLGIV
EVDDAGEPVATEVETLRHDGNPVMTWCAGNAVTTSDPANNRKVDKAKSRGRIDGIVAALEATGVSAGGRPAGARSIYDEG
VGI

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 62930; Mature: 62930

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGAAQRHLDDLLTGHLRGLVWRQDLADRALGFFEDVLKLNGGEYEAKPFLLAPWQAFVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHH
GSIFGWYTQDGFRRFSIAYIETGKGSGKSPLAAGIGLYGLTADGEQRAEVYAAATKRDQA
HHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCHH
QILFRDAVSMVNLSPMLQSRLVQSGRDEKVWNLFYPATNGFFRTIASDEGQSGPRPHIGL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHEECCCCCCCCCCCCCCCH
IDEVHEHTTSTVVEMMLAGRKSRRRALVLMITNSGSDLNTVCGQYHELGIKVCRGELVND
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
AIFAFICALDEGEDPFKDEACWAKVNPSLDYKAHGQTDGIPGRRYLREQVHTARGVPAKE
HHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
AVVRRLNFCQWTQAESPWIGWDVWKDAQERVPLSLLRNRPAVAGLDLSSTTDLTAFVLLF
HHHHHHHHHHCCCCCCCCCCHHHHHCHHHCCCHHHHCCCCCEEECCCCCCHHHHHHHHHH
YPTVADPHWRLMPYFWIPDHDIEGREERDRVPYTVWIKEKWLETTPGRAISKLHVLRRLQ
HCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHH
SICGHFQVLKIAYDRWRIEDLQQLMVEHGIELPPLEKFGQGYQDMAPAVDEFERRLLGIV
HHHCCHHEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCEE
EVDDAGEPVATEVETLRHDGNPVMTWCAGNAVTTSDPANNRKVDKAKSRGRIDGIVAALE
EECCCCCCHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCHHHHHCCCHHHHHHHHH
ATGVSAGGRPAGARSIYDEGVGI
HCCCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure
MRGAAQRHLDDLLTGHLRGLVWRQDLADRALGFFEDVLKLNGGEYEAKPFLLAPWQAFVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHH
GSIFGWYTQDGFRRFSIAYIETGKGSGKSPLAAGIGLYGLTADGEQRAEVYAAATKRDQA
HHHHHHHHCCCCEEEEEEEEECCCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCHH
QILFRDAVSMVNLSPMLQSRLVQSGRDEKVWNLFYPATNGFFRTIASDEGQSGPRPHIGL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHEECCCCCCCCCCCCCCCH
IDEVHEHTTSTVVEMMLAGRKSRRRALVLMITNSGSDLNTVCGQYHELGIKVCRGELVND
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
AIFAFICALDEGEDPFKDEACWAKVNPSLDYKAHGQTDGIPGRRYLREQVHTARGVPAKE
HHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHH
AVVRRLNFCQWTQAESPWIGWDVWKDAQERVPLSLLRNRPAVAGLDLSSTTDLTAFVLLF
HHHHHHHHHHCCCCCCCCCCHHHHHCHHHCCCHHHHCCCCCEEECCCCCCHHHHHHHHHH
YPTVADPHWRLMPYFWIPDHDIEGREERDRVPYTVWIKEKWLETTPGRAISKLHVLRRLQ
HCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCEEEEEEHHHHCCCCCHHHHHHHHHHHHH
SICGHFQVLKIAYDRWRIEDLQQLMVEHGIELPPLEKFGQGYQDMAPAVDEFERRLLGIV
HHHCCHHEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCEE
EVDDAGEPVATEVETLRHDGNPVMTWCAGNAVTTSDPANNRKVDKAKSRGRIDGIVAALE
EECCCCCCHHHHHHHHHCCCCEEEEEECCCEEECCCCCCCCCCHHHHHCCCHHHHHHHHH
ATGVSAGGRPAGARSIYDEGVGI
HCCCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]