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The map label for this gene is yeaM [H]

Identifier: 120609393

GI number: 120609393

Start: 755815

End: 756645

Strand: Reverse

Name: yeaM [H]

Synonym: Aave_0696

Alternate gene names: 120609393

Gene position: 756645-755815 (Counterclockwise)

Preceding gene: 120609395

Following gene: 120609392

Centisome position: 14.14

GC content: 59.09

Gene sequence:

>831_bases
ATGCAGGACAACGCATACGCCACTTCCGACAAAATGACCATGGGCTCAGATACCGGGCAGCGCACGCCATTGCTTCCGGA
TTCCGTGACAGTGAAAGTCGTGCAACTGCCCGAGGGTGCAGACTTTCCGACAGAGCAGCACCCTTGGGGACAATTCGTCT
ACCCCCGTGCTGGTGTCATCGAGTTGACCGTCAAGAGCAACCGCTATGCAGCCCCGCCAGACTTTGGCGTGTGGTTGCCG
CCCGGGACTGAACATGTCGCGAGGGCTGATGGCGAGACCTCCTACTTTGTCTTGGACATCGACGCCGACCTGTGCGCTCG
CCTTCCCCGACGCGCCAGTGTTCTTTCTGTGAGTGCTATCGCAAAGGCAGTATTTCTGGACTTGCAGAAGCGGCAAGTGC
GCAAGCCCCAAAGCCCGGAGGATGTCCGGTTGATGGAGGTGCTGATCGATCAGCTAAGTGCCAGCGTGCCGGTGGATAGC
TTCCTCCCGATGTCGAGTGATGCCGCACTTCGGAATGTGCTGGAGGCACTCTGCAAGAACCCTGGCGATAGCCGGACGCT
CGTTGAATGGGCCAGGTATGTCCACAGCACAGAGCGCACATTGGCAAGGCGGTGTACCCGCGACCTCGGCATGACCTTCT
TGGAATGGCGGCAGCGGCTTCGGTTGTCACGCGCATTTGCCATGCTGGCGGACGGTCTTGCTGTTCAAGTGGTTGCGCAA
CAGCTTGGCTATGGCACAACCTCGGCATTCATCGCGATGTTTCAGAAAACGATTGGCACTACGCCGAACACATTCCGAGG
GCGATTGCGGGATGGTGCGGAGCAGCGCTAG

Upstream 100 bases:

>100_bases
AGATCCAGGCGAGGGATTTTGTTCAACGTTTCCAGGGCAGTCATCGCAGAGTCCTCAAAGCAACATCAGGTGAAGAAACT
GTAGTTGGCATGCATACTGA

Downstream 100 bases:

>100_bases
CACAGCCCCTGTCATCGCCCAACGTGGCGCTCGCGGAACTTGAGCGGTGTGCATTCAGTAGTGCGCGGAAAGAATCTCAC
GAAGGTGGCGGGTTCCGTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MQDNAYATSDKMTMGSDTGQRTPLLPDSVTVKVVQLPEGADFPTEQHPWGQFVYPRAGVIELTVKSNRYAAPPDFGVWLP
PGTEHVARADGETSYFVLDIDADLCARLPRRASVLSVSAIAKAVFLDLQKRQVRKPQSPEDVRLMEVLIDQLSASVPVDS
FLPMSSDAALRNVLEALCKNPGDSRTLVEWARYVHSTERTLARRCTRDLGMTFLEWRQRLRLSRAFAMLADGLAVQVVAQ
QLGYGTTSAFIAMFQKTIGTTPNTFRGRLRDGAEQR

Sequences:

>Translated_276_residues
MQDNAYATSDKMTMGSDTGQRTPLLPDSVTVKVVQLPEGADFPTEQHPWGQFVYPRAGVIELTVKSNRYAAPPDFGVWLP
PGTEHVARADGETSYFVLDIDADLCARLPRRASVLSVSAIAKAVFLDLQKRQVRKPQSPEDVRLMEVLIDQLSASVPVDS
FLPMSSDAALRNVLEALCKNPGDSRTLVEWARYVHSTERTLARRCTRDLGMTFLEWRQRLRLSRAFAMLADGLAVQVVAQ
QLGYGTTSAFIAMFQKTIGTTPNTFRGRLRDGAEQR
>Mature_276_residues
MQDNAYATSDKMTMGSDTGQRTPLLPDSVTVKVVQLPEGADFPTEQHPWGQFVYPRAGVIELTVKSNRYAAPPDFGVWLP
PGTEHVARADGETSYFVLDIDADLCARLPRRASVLSVSAIAKAVFLDLQKRQVRKPQSPEDVRLMEVLIDQLSASVPVDS
FLPMSSDAALRNVLEALCKNPGDSRTLVEWARYVHSTERTLARRCTRDLGMTFLEWRQRLRLSRAFAMLADGLAVQVVAQ
QLGYGTTSAFIAMFQKTIGTTPNTFRGRLRDGAEQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=229, Percent_Identity=34.061135371179, Blast_Score=138, Evalue=4e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 30660; Mature: 30660

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDNAYATSDKMTMGSDTGQRTPLLPDSVTVKVVQLPEGADFPTEQHPWGQFVYPRAGVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCEE
ELTVKSNRYAAPPDFGVWLPPGTEHVARADGETSYFVLDIDADLCARLPRRASVLSVSAI
EEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHH
AKAVFLDLQKRQVRKPQSPEDVRLMEVLIDQLSASVPVDSFLPMSSDAALRNVLEALCKN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCC
PGDSRTLVEWARYVHSTERTLARRCTRDLGMTFLEWRQRLRLSRAFAMLADGLAVQVVAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
QLGYGTTSAFIAMFQKTIGTTPNTFRGRLRDGAEQR
HHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MQDNAYATSDKMTMGSDTGQRTPLLPDSVTVKVVQLPEGADFPTEQHPWGQFVYPRAGVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCEE
ELTVKSNRYAAPPDFGVWLPPGTEHVARADGETSYFVLDIDADLCARLPRRASVLSVSAI
EEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHH
AKAVFLDLQKRQVRKPQSPEDVRLMEVLIDQLSASVPVDSFLPMSSDAALRNVLEALCKN
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHHCC
PGDSRTLVEWARYVHSTERTLARRCTRDLGMTFLEWRQRLRLSRAFAMLADGLAVQVVAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
QLGYGTTSAFIAMFQKTIGTTPNTFRGRLRDGAEQR
HHCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]