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The map label for this gene is nocR [H]

Identifier: 120609198

GI number: 120609198

Start: 534594

End: 535541

Strand: Reverse

Name: nocR [H]

Synonym: Aave_0496

Alternate gene names: 120609198

Gene position: 535541-534594 (Counterclockwise)

Preceding gene: 120609203

Following gene: 120609197

Centisome position: 10.0

GC content: 61.71

Gene sequence:

>948_bases
ATGCAGTTTCGACTCAAACAGATGGACGTCTTCCGCGCGGTGATGTTAACCGGCACGGTAAAAGGTGCCGCCGCCATGCT
GTGCCAGTCACAGCCCGCCGTCAGCCGCTCGCTCGCACACACCGAGCAGTCGCTGGGCCTCACCCTCTTCCAACGCACCA
AGGGCAGACTGGTGCCCACCCCGGAAGCGGAAGCGTTGATCGAGCAGGTCAACCCGTTCTTCCAACACGCGATCCGCATC
AACGATTTCGCGACCAGCCTGCGCACCGCTTCGGTAGGTCACCTCACCGTGATTTCCAGCTATTGCCTGAGTCGGGGCCT
GGTGTCCAGAGCAGTCGTTCGCTTCATGGAGCGGCACCCCAAGGTACAGGTGCAACTGCGCACCAGTCTGCTCGCCGACA
TGCCCAAGGCATTACTCAGTGAAGAAGCAGACATCGCGGTTGCCGCCGTGGCAATGGACCATCTGCAACTACAGGTCCAA
CCTCTTACGGAGGGGCGCATGGTCTGTGTGATGCAGACCGGCCACCCCTTGGCGGGAGCCGATAGCGTGTGCTTCACCGA
CCTGGCAAAGCATGTCGTCATCACGCCCCATCCCAGCATCCCATTCGGGCAACTGCTGTCCGCAGCACTGGAGCGGGCCG
GTGTTTCCCTGGACGCACGCGTCAACGTCCACAACATGGATCTCGCCTGTGCATTGGTCCGTGCCGGTGCCGGGCTCGCC
ATCGTGGATGAATTTACTGTGGACGGGCTGGACGGCATGCAGGGCCTCGCGACCGTCGCGCTCAAGGAGGATGTGCTGAT
CGCGCCGGCCGTCATTTGCTCTGCGCACAGAGCAATGCGCCCATGCACCGAGTCGTTCCTAGACGCCCTGACGGAGCAGG
CATTCATGGACCGCCAACGGAGAAGCCGTGTGGAACGCGAGCAAAAGCCTTGTTTATCGGCGACATAA

Upstream 100 bases:

>100_bases
GCATAACAAAAGAAACTGGTGCATCCGCTACACCAGAAGGCGCATATCCGATAAACAGCCGCCATGATTTGCCAATCCTG
AACGTAACCGATTGGCCGTC

Downstream 100 bases:

>100_bases
AAGAAGACAGCCCGTTCCTTGGAAAGGTCAGTATGCGTTAACTCGACAGTCATACCCTCAAAACGATTTTGCAATCGATG
GATTCCGTGCTGCGGCATAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQFRLKQMDVFRAVMLTGTVKGAAAMLCQSQPAVSRSLAHTEQSLGLTLFQRTKGRLVPTPEAEALIEQVNPFFQHAIRI
NDFATSLRTASVGHLTVISSYCLSRGLVSRAVVRFMERHPKVQVQLRTSLLADMPKALLSEEADIAVAAVAMDHLQLQVQ
PLTEGRMVCVMQTGHPLAGADSVCFTDLAKHVVITPHPSIPFGQLLSAALERAGVSLDARVNVHNMDLACALVRAGAGLA
IVDEFTVDGLDGMQGLATVALKEDVLIAPAVICSAHRAMRPCTESFLDALTEQAFMDRQRRSRVEREQKPCLSAT

Sequences:

>Translated_315_residues
MQFRLKQMDVFRAVMLTGTVKGAAAMLCQSQPAVSRSLAHTEQSLGLTLFQRTKGRLVPTPEAEALIEQVNPFFQHAIRI
NDFATSLRTASVGHLTVISSYCLSRGLVSRAVVRFMERHPKVQVQLRTSLLADMPKALLSEEADIAVAAVAMDHLQLQVQ
PLTEGRMVCVMQTGHPLAGADSVCFTDLAKHVVITPHPSIPFGQLLSAALERAGVSLDARVNVHNMDLACALVRAGAGLA
IVDEFTVDGLDGMQGLATVALKEDVLIAPAVICSAHRAMRPCTESFLDALTEQAFMDRQRRSRVEREQKPCLSAT
>Mature_315_residues
MQFRLKQMDVFRAVMLTGTVKGAAAMLCQSQPAVSRSLAHTEQSLGLTLFQRTKGRLVPTPEAEALIEQVNPFFQHAIRI
NDFATSLRTASVGHLTVISSYCLSRGLVSRAVVRFMERHPKVQVQLRTSLLADMPKALLSEEADIAVAAVAMDHLQLQVQ
PLTEGRMVCVMQTGHPLAGADSVCFTDLAKHVVITPHPSIPFGQLLSAALERAGVSLDARVNVHNMDLACALVRAGAGLA
IVDEFTVDGLDGMQGLATVALKEDVLIAPAVICSAHRAMRPCTESFLDALTEQAFMDRQRRSRVEREQKPCLSAT

Specific function: Positive regulatory protein for the noc operon involved in nopaline catabolism and uptake [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=242, Percent_Identity=29.7520661157025, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787601, Length=277, Percent_Identity=26.3537906137184, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787530, Length=233, Percent_Identity=24.4635193133047, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790262, Length=288, Percent_Identity=25, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI145693105, Length=243, Percent_Identity=20.9876543209877, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788481, Length=178, Percent_Identity=25.2808988764045, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87082132, Length=299, Percent_Identity=23.4113712374582, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1788296, Length=221, Percent_Identity=24.8868778280543, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34191; Mature: 34191

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFRLKQMDVFRAVMLTGTVKGAAAMLCQSQPAVSRSLAHTEQSLGLTLFQRTKGRLVPT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCC
PEAEALIEQVNPFFQHAIRINDFATSLRTASVGHLTVISSYCLSRGLVSRAVVRFMERHP
CHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
KVQVQLRTSLLADMPKALLSEEADIAVAAVAMDHLQLQVQPLTEGRMVCVMQTGHPLAGA
CEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCC
DSVCFTDLAKHVVITPHPSIPFGQLLSAALERAGVSLDARVNVHNMDLACALVRAGAGLA
CHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCEE
IVDEFTVDGLDGMQGLATVALKEDVLIAPAVICSAHRAMRPCTESFLDALTEQAFMDRQR
EEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSRVEREQKPCLSAT
HHHHHHHHCCCCCCC
>Mature Secondary Structure
MQFRLKQMDVFRAVMLTGTVKGAAAMLCQSQPAVSRSLAHTEQSLGLTLFQRTKGRLVPT
CCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCC
PEAEALIEQVNPFFQHAIRINDFATSLRTASVGHLTVISSYCLSRGLVSRAVVRFMERHP
CHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
KVQVQLRTSLLADMPKALLSEEADIAVAAVAMDHLQLQVQPLTEGRMVCVMQTGHPLAGA
CEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCC
DSVCFTDLAKHVVITPHPSIPFGQLLSAALERAGVSLDARVNVHNMDLACALVRAGAGLA
CHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCEE
IVDEFTVDGLDGMQGLATVALKEDVLIAPAVICSAHRAMRPCTESFLDALTEQAFMDRQR
EEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSRVEREQKPCLSAT
HHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1799698; 11743193; 11743194 [H]