Click here to switch to the map view.

The map label for this gene is hrpB6 [H]

Identifier: 120609166

GI number: 120609166

Start: 501480

End: 502808

Strand: Reverse

Name: hrpB6 [H]

Synonym: Aave_0463

Alternate gene names: 120609166

Gene position: 502808-501480 (Counterclockwise)

Preceding gene: 120609167

Following gene: 120609161

Centisome position: 9.39

GC content: 69.83

Gene sequence:

>1329_bases
ATGCATGACGTGAACGGAACCGCGCGGATTGCCCGCTGGATGGAGCGCGAGATCGCCGCCGCCCCGCTGGTGCGCCGCAG
CGGCAAGGTGGCCGAGGTGATCGGCACGCTCATGCGCGTGAACGGCCTGGACGCCAAGCTGGGCGAGCTGTGCCATGTGC
TGGACGAGCGCGGCGAGCTGCTGCAGGCGGCCGAGGTGGTGGGCTTCGCCAACGGGCAGAGCATTCTCTCGCCCTTCGGC
TCCATCCTCGGCGTGCGCGGCGGATCGCCCGTGGTGGGCCTGGGCGAAGTGCTCTCGGTGCCCGTCGGCCCCCGGCTGCT
GGGCCGCGTGATCGACAGCCTGGGCCAGCCCATCGACGGCAAGGGGCCGCTGGACTGCAGCGAGACACGGCCCGTGTTCG
CCCTGCCGCCCACGCCCATGGAGCGCGAGATGATCGAGCACCCCCTGCCCACGGGGGTGAAGGCCATCGACGGGCTCATC
ACCCTGGGCGAGGGGCAGCGCATGGGCATCTTCGCACCCGCCGGCGTGGGCAAGAGTACGCTGATGGGCATGCTCGCGCG
CGGCACGCAGTGCGACGTCAGCGTGATCGCGCTCATCGGCGAGCGGGGCCGCGAAGTGCGCGAATTCGTCGAGTTCATCC
TCGGCGAGGAAGGCATGGCGCGCTCGGTAGTGGTCTGCGCCACCTCGGACCGCTCATCCAGCGAACGGGCCAAGGCGGCC
CACGTGGCCACCGCCGTGGCGGAGTACTACCGCGACCAGGGCCTGAAGGTGCTGCTGATGATGGATTCGCTCACCCGCTT
CGCGCGGGCCCAGCGCGAGATCGGCCTGGCTGCGGGTGAACCGCCGGCGCGCCGGGGCTTTCCGCCCTCGGTGTTCGCCG
AGATCCCGCGGCTGCTGGAGCGTGCCGGCATGGGCGCGCGCGGCTCCATCACCGCGCTCTATACCGTGCTCTACGAGGAT
GAAAGCGGCAACGACCCGATCTCGGAGGAAGTGCGAGGCATCCTCGACGGGCACATGATCCTCTCGCGCAAGATCGCCGC
GCGCAACCAGTACCCGGCCATCGACGTGCTGGGCAGCCTGTCGCGGGTGATGTCGCAGATCGTTCCCCGGGAACACCAGC
AGGCCGGCGGGCGCTTCCGCCAGCTCATGGCCAAGTACGAGGAGATCGAGCCGCTGGTGCAGATGGGCGAGTACCGGCCC
GGCAACGATCCGCTGGCGGACGAGGCCATGGAAAAGCACGCCGCGATCCGCGACTTCCTCAACCAGTCCACCTCGGACCT
CTGGGATTTCGGGCGCTCCGTCGATACGCTCGCCGACATCTCGGGTTGA

Upstream 100 bases:

>100_bases
GTGGCCTATGCGAGCCGGCTGGGCGAGGACGATGGCCACGACAACGACGAATACCAGGACGATGGACAGGACGACGATCG
CCTGCCCCGGGAGGATGACG

Downstream 100 bases:

>100_bases
TGCCTCCCCGCCCGGATCCGGCCACGGGGAGGCCCCGTCCCTTCCGGGCCGAGGCGCCAACCCGAGCCTGGACAAGCCAT
GCCGCAGGAACTGCGCCAGT

Product: type III secretion system ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MHDVNGTARIARWMEREIAAAPLVRRSGKVAEVIGTLMRVNGLDAKLGELCHVLDERGELLQAAEVVGFANGQSILSPFG
SILGVRGGSPVVGLGEVLSVPVGPRLLGRVIDSLGQPIDGKGPLDCSETRPVFALPPTPMEREMIEHPLPTGVKAIDGLI
TLGEGQRMGIFAPAGVGKSTLMGMLARGTQCDVSVIALIGERGREVREFVEFILGEEGMARSVVVCATSDRSSSERAKAA
HVATAVAEYYRDQGLKVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAEIPRLLERAGMGARGSITALYTVLYED
ESGNDPISEEVRGILDGHMILSRKIAARNQYPAIDVLGSLSRVMSQIVPREHQQAGGRFRQLMAKYEEIEPLVQMGEYRP
GNDPLADEAMEKHAAIRDFLNQSTSDLWDFGRSVDTLADISG

Sequences:

>Translated_442_residues
MHDVNGTARIARWMEREIAAAPLVRRSGKVAEVIGTLMRVNGLDAKLGELCHVLDERGELLQAAEVVGFANGQSILSPFG
SILGVRGGSPVVGLGEVLSVPVGPRLLGRVIDSLGQPIDGKGPLDCSETRPVFALPPTPMEREMIEHPLPTGVKAIDGLI
TLGEGQRMGIFAPAGVGKSTLMGMLARGTQCDVSVIALIGERGREVREFVEFILGEEGMARSVVVCATSDRSSSERAKAA
HVATAVAEYYRDQGLKVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAEIPRLLERAGMGARGSITALYTVLYED
ESGNDPISEEVRGILDGHMILSRKIAARNQYPAIDVLGSLSRVMSQIVPREHQQAGGRFRQLMAKYEEIEPLVQMGEYRP
GNDPLADEAMEKHAAIRDFLNQSTSDLWDFGRSVDTLADISG
>Mature_442_residues
MHDVNGTARIARWMEREIAAAPLVRRSGKVAEVIGTLMRVNGLDAKLGELCHVLDERGELLQAAEVVGFANGQSILSPFG
SILGVRGGSPVVGLGEVLSVPVGPRLLGRVIDSLGQPIDGKGPLDCSETRPVFALPPTPMEREMIEHPLPTGVKAIDGLI
TLGEGQRMGIFAPAGVGKSTLMGMLARGTQCDVSVIALIGERGREVREFVEFILGEEGMARSVVVCATSDRSSSERAKAA
HVATAVAEYYRDQGLKVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAEIPRLLERAGMGARGSITALYTVLYED
ESGNDPISEEVRGILDGHMILSRKIAARNQYPAIDVLGSLSRVMSQIVPREHQQAGGRFRQLMAKYEEIEPLVQMGEYRP
GNDPLADEAMEKHAAIRDFLNQSTSDLWDFGRSVDTLADISG

Specific function: Necessary for both basic pathogenicity and the induction of the hypersensitive response in resistant plants. May function as an ATPase that is related to a transport apparatus rather than as part of a proton pump [H]

COG id: COG1157

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway ATPase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=414, Percent_Identity=29.7101449275362, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI50345984, Length=420, Percent_Identity=29.5238095238095, Blast_Score=155, Evalue=6e-38,
Organism=Homo sapiens, GI4757810, Length=420, Percent_Identity=29.5238095238095, Blast_Score=155, Evalue=6e-38,
Organism=Homo sapiens, GI19913428, Length=292, Percent_Identity=29.4520547945205, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI19913426, Length=421, Percent_Identity=25.8907363420428, Blast_Score=109, Evalue=5e-24,
Organism=Homo sapiens, GI19913424, Length=260, Percent_Identity=29.6153846153846, Blast_Score=107, Evalue=3e-23,
Organism=Escherichia coli, GI1788251, Length=438, Percent_Identity=44.9771689497717, Blast_Score=345, Evalue=5e-96,
Organism=Escherichia coli, GI1790172, Length=413, Percent_Identity=29.5399515738499, Blast_Score=158, Evalue=8e-40,
Organism=Escherichia coli, GI1790170, Length=351, Percent_Identity=30.4843304843305, Blast_Score=148, Evalue=7e-37,
Organism=Escherichia coli, GI1790217, Length=241, Percent_Identity=29.4605809128631, Blast_Score=75, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25144756, Length=422, Percent_Identity=29.1469194312796, Blast_Score=151, Evalue=7e-37,
Organism=Caenorhabditis elegans, GI71988063, Length=332, Percent_Identity=31.6265060240964, Blast_Score=148, Evalue=5e-36,
Organism=Caenorhabditis elegans, GI71988080, Length=332, Percent_Identity=31.6265060240964, Blast_Score=148, Evalue=6e-36,
Organism=Caenorhabditis elegans, GI71988074, Length=297, Percent_Identity=29.96632996633, Blast_Score=122, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=323, Percent_Identity=25.3869969040248, Blast_Score=114, Evalue=9e-26,
Organism=Caenorhabditis elegans, GI17565854, Length=337, Percent_Identity=28.1899109792285, Blast_Score=112, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=289, Percent_Identity=28.0276816608997, Blast_Score=112, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6319370, Length=361, Percent_Identity=32.1329639889197, Blast_Score=167, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6322581, Length=427, Percent_Identity=29.5081967213115, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6319603, Length=311, Percent_Identity=27.6527331189711, Blast_Score=115, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6320016, Length=261, Percent_Identity=28.735632183908, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24638766, Length=414, Percent_Identity=29.7101449275362, Blast_Score=160, Evalue=2e-39,
Organism=Drosophila melanogaster, GI24658560, Length=410, Percent_Identity=30.4878048780488, Blast_Score=152, Evalue=5e-37,
Organism=Drosophila melanogaster, GI28574560, Length=356, Percent_Identity=28.9325842696629, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI281361666, Length=327, Percent_Identity=25.6880733944954, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24646341, Length=327, Percent_Identity=25.6880733944954, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI17136796, Length=327, Percent_Identity=25.6880733944954, Blast_Score=115, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24583992, Length=335, Percent_Identity=27.1641791044776, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24583988, Length=336, Percent_Identity=27.6785714285714, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583986, Length=336, Percent_Identity=27.6785714285714, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24583984, Length=336, Percent_Identity=27.6785714285714, Blast_Score=108, Evalue=1e-23,
Organism=Drosophila melanogaster, GI20129479, Length=258, Percent_Identity=27.5193798449612, Blast_Score=102, Evalue=4e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR004100
- InterPro:   IPR005714
- InterPro:   IPR013380 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 47659; Mature: 47659

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDVNGTARIARWMEREIAAAPLVRRSGKVAEVIGTLMRVNGLDAKLGELCHVLDERGEL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LQAAEVVGFANGQSILSPFGSILGVRGGSPVVGLGEVLSVPVGPRLLGRVIDSLGQPIDG
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEECHHHHHCCCCHHHHHHHHHHHCCCCCC
KGPLDCSETRPVFALPPTPMEREMIEHPLPTGVKAIDGLITLGEGQRMGIFAPAGVGKST
CCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCHHHHHHHEEECCCCEEEEECCCCCCHHH
LMGMLARGTQCDVSVIALIGERGREVREFVEFILGEEGMARSVVVCATSDRSSSERAKAA
HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHH
HVATAVAEYYRDQGLKVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAEIPRLLE
HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
RAGMGARGSITALYTVLYEDESGNDPISEEVRGILDGHMILSRKIAARNQYPAIDVLGSL
HCCCCCCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SRVMSQIVPREHQQAGGRFRQLMAKYEEIEPLVQMGEYRPGNDPLADEAMEKHAAIRDFL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
NQSTSDLWDFGRSVDTLADISG
CCCHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MHDVNGTARIARWMEREIAAAPLVRRSGKVAEVIGTLMRVNGLDAKLGELCHVLDERGEL
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LQAAEVVGFANGQSILSPFGSILGVRGGSPVVGLGEVLSVPVGPRLLGRVIDSLGQPIDG
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEECHHHHHCCCCHHHHHHHHHHHCCCCCC
KGPLDCSETRPVFALPPTPMEREMIEHPLPTGVKAIDGLITLGEGQRMGIFAPAGVGKST
CCCCCCCCCCCEEECCCCCHHHHHHHCCCCCCHHHHHHHEEECCCCEEEEECCCCCCHHH
LMGMLARGTQCDVSVIALIGERGREVREFVEFILGEEGMARSVVVCATSDRSSSERAKAA
HHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHH
HVATAVAEYYRDQGLKVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAEIPRLLE
HHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
RAGMGARGSITALYTVLYEDESGNDPISEEVRGILDGHMILSRKIAARNQYPAIDVLGSL
HCCCCCCCCHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
SRVMSQIVPREHQQAGGRFRQLMAKYEEIEPLVQMGEYRPGNDPLADEAMEKHAAIRDFL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
NQSTSDLWDFGRSVDTLADISG
CCCHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1472717 [H]