BacMap

Definition	Acidovorax citrulli AAC00-1 chromosome, complete genome.
Accession	NC_008752
Length	5,352,772

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The map label for this gene is ygfF [H]

Identifier: 120609023

GI number: 120609023

Start: 352436

End: 353185

Strand: Reverse

Name: ygfF [H]

Synonym: Aave_0320

Alternate gene names: 120609023

Gene position: 353185-352436 (Counterclockwise)

Preceding gene: 120609025

Following gene: 120609022

Centisome position: 6.6

GC content: 71.6

Gene sequence:

>750_bases
ATGGACAAAAAAGTGGTTTTGGTGACGGGAGGCAGCCGGGGCATCGGCGCCGCCACCGCCCGGCTGGCCGCCCGGCACGG
CTGGGCCGTGGCGGTGAACTATGCGCGCGATGCCGCTGCGGCGGGGCGCGTGGTCGATGCCATCCGGGAGGAAGGCGGCG
ACGCCGTGGCCATCCAGGCGGACGTGGCGGACGAGTCGCAGGTCGTGGCGCTGTTCGAGGCGGTGGACGCGCAGTGGGGC
CGGCTGTCGGGCCTGGTGAACAATGCCGGCGTGGTGGACGTGCCGGCACGCGTGTCCGAGATGAGCGGCCAGCGGCTGCG
GCGCATGTTCGACATCAACGTGCTGGGCAGCTTCTACTGCGCCCGCGAGGCAGTTCGGCGCATGGGCCTGCAGCGCGGCG
GCCAGGGCGGCAGCATCGTCAACGTTTCCAGCGCCGCAGCCCGCCTGGGTGCCGCCCACCAGTACGTGGACTACGCGGCA
GCCAAGGGCGCCATCGACGTGCTCACGGTGGGCCTCGCGCGCGAAGTGGCCGCGGAAGGCATCCGCGTGAACGCGGTGCG
GCCCGGCCTGATCGATACCGAGATCCACGCGAGCGGAGGGTTGCCCGACCGTGTGCGCGACCTTGCCCACCAGGTGCCCA
TGGGCCGGGGCGGCACGCCGGAAGAAGTGGCCGAATCCATCGTCTGGCTGCTGTCGGACGCCGCGAGCTACACCACCATG
AGCCTGCTGGACGTTTCCGGCGGCCGCTGA

Upstream 100 bases:

>100_bases
CCGGGGGGAGGGAGCGGCGGGTACCGATCGCAGCAGCCGGACCGCGCCGGGCGCGGCAGTGCTGTAATCGCGCCACGGCA
TTCTTGCAGGAGACGCACCC

Downstream 100 bases:

>100_bases
ACCGGACACCGACATCCCATGGACCTCAAACCCCTCATCACCCTGCTGGCCATCGTGAACCCGCTGGCCATCGTGCCCTT
CTTCATCCACTACACCGACG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MDKKVVLVTGGSRGIGAATARLAARHGWAVAVNYARDAAAAGRVVDAIREEGGDAVAIQADVADESQVVALFEAVDAQWG
RLSGLVNNAGVVDVPARVSEMSGQRLRRMFDINVLGSFYCAREAVRRMGLQRGGQGGSIVNVSSAAARLGAAHQYVDYAA
AKGAIDVLTVGLAREVAAEGIRVNAVRPGLIDTEIHASGGLPDRVRDLAHQVPMGRGGTPEEVAESIVWLLSDAASYTTM
SLLDVSGGR

Sequences:

>Translated_249_residues
MDKKVVLVTGGSRGIGAATARLAARHGWAVAVNYARDAAAAGRVVDAIREEGGDAVAIQADVADESQVVALFEAVDAQWG
RLSGLVNNAGVVDVPARVSEMSGQRLRRMFDINVLGSFYCAREAVRRMGLQRGGQGGSIVNVSSAAARLGAAHQYVDYAA
AKGAIDVLTVGLAREVAAEGIRVNAVRPGLIDTEIHASGGLPDRVRDLAHQVPMGRGGTPEEVAESIVWLLSDAASYTTM
SLLDVSGGR
>Mature_249_residues
MDKKVVLVTGGSRGIGAATARLAARHGWAVAVNYARDAAAAGRVVDAIREEGGDAVAIQADVADESQVVALFEAVDAQWG
RLSGLVNNAGVVDVPARVSEMSGQRLRRMFDINVLGSFYCAREAVRRMGLQRGGQGGSIVNVSSAAARLGAAHQYVDYAA
AKGAIDVLTVGLAREVAAEGIRVNAVRPGLIDTEIHASGGLPDRVRDLAHQVPMGRGGTPEEVAESIVWLLSDAASYTTM
SLLDVSGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=255, Percent_Identity=39.6078431372549, Blast_Score=126, Evalue=2e-29,
Organism=Homo sapiens, GI59889578, Length=207, Percent_Identity=35.7487922705314, Blast_Score=104, Evalue=7e-23,
Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=33.0677290836653, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI4758504, Length=240, Percent_Identity=32.9166666666667, Blast_Score=95, Evalue=7e-20,
Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=31.6602316602317, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=29.9180327868852, Blast_Score=91, Evalue=9e-19,
Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=31.4516129032258, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI31542939, Length=198, Percent_Identity=34.3434343434343, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=30.952380952381, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI83715985, Length=240, Percent_Identity=30.8333333333333, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=30.7692307692308, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI209862901, Length=212, Percent_Identity=32.0754716981132, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI19923983, Length=212, Percent_Identity=32.0754716981132, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4504505, Length=248, Percent_Identity=31.8548387096774, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI193804850, Length=210, Percent_Identity=30.952380952381, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=34.2857142857143, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI66933014, Length=211, Percent_Identity=26.5402843601896, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=56.734693877551, Blast_Score=281, Evalue=3e-77,
Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=36, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=32.2709163346614, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=33.3333333333333, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=34.2857142857143, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=31.5175097276265, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=30.6451612903226, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=29.9595141700405, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1789057, Length=261, Percent_Identity=32.183908045977, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=32.5396825396825, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=27.5303643724696, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789208, Length=253, Percent_Identity=26.8774703557312, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787820, Length=249, Percent_Identity=24.8995983935743, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=228, Percent_Identity=37.280701754386, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=34.1463414634146, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=34.1269841269841, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=32.2448979591837, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=31.4741035856574, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994600, Length=263, Percent_Identity=31.5589353612167, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=31.640625, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=31.4741035856574, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI72000259, Length=241, Percent_Identity=32.7800829875519, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=245, Percent_Identity=32.2448979591837, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17562910, Length=241, Percent_Identity=32.3651452282158, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=29.7709923664122, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17563726, Length=239, Percent_Identity=32.6359832635983, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=240, Percent_Identity=31.25, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562904, Length=241, Percent_Identity=28.6307053941909, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=29.3172690763052, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17565030, Length=248, Percent_Identity=31.0483870967742, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=27.1653543307087, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17562990, Length=246, Percent_Identity=30.4878048780488, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=213, Percent_Identity=30.0469483568075, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=246, Percent_Identity=32.1138211382114, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17544670, Length=248, Percent_Identity=27.0161290322581, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=250, Percent_Identity=31.6, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=245, Percent_Identity=29.7959183673469, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=248, Percent_Identity=30.6451612903226, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=241, Percent_Identity=31.1203319502075, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562906, Length=241, Percent_Identity=31.5352697095436, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=28.8, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=241, Percent_Identity=29.8755186721992, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=242, Percent_Identity=30.5785123966942, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=30.5882352941176, Blast_Score=78, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=31.4432989690722, Blast_Score=75, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=31.3131313131313, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=247, Percent_Identity=26.3157894736842, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=35.7142857142857, Blast_Score=117, Evalue=5e-27,
Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=35.1351351351351, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24644339, Length=259, Percent_Identity=32.4324324324324, Blast_Score=109, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=33.1983805668016, Blast_Score=107, Evalue=5e-24,
Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=32.2834645669291, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=32.6446280991736, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17737361, Length=231, Percent_Identity=34.1991341991342, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=33.1983805668016, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=31.6205533596838, Blast_Score=84, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24663911, Length=236, Percent_Identity=30.0847457627119, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI281364494, Length=225, Percent_Identity=31.1111111111111, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=31.25, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24641388, Length=262, Percent_Identity=30.5343511450382, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641232, Length=216, Percent_Identity=31.4814814814815, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859837, Length=212, Percent_Identity=35.8490566037736, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI21357673, Length=205, Percent_Identity=29.2682926829268, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648944, Length=222, Percent_Identity=29.7297297297297, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007234, Length=249, Percent_Identity=28.9156626506024, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24648693, Length=246, Percent_Identity=26.0162601626016, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI21355889, Length=246, Percent_Identity=26.0162601626016, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI28571387, Length=243, Percent_Identity=27.1604938271605, Blast_Score=67, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25888; Mature: 25888

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKVVLVTGGSRGIGAATARLAARHGWAVAVNYARDAAAAGRVVDAIREEGGDAVAIQA
CCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEE
DVADESQVVALFEAVDAQWGRLSGLVNNAGVVDVPARVSEMSGQRLRRMFDINVLGSFYC
CCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
AREAVRRMGLQRGGQGGSIVNVSSAAARLGAAHQYVDYAAAKGAIDVLTVGLAREVAAEG
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
IRVNAVRPGLIDTEIHASGGLPDRVRDLAHQVPMGRGGTPEEVAESIVWLLSDAASYTTM
EEEEEECCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEE
SLLDVSGGR
EEEECCCCC
>Mature Secondary Structure
MDKKVVLVTGGSRGIGAATARLAARHGWAVAVNYARDAAAAGRVVDAIREEGGDAVAIQA
CCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEE
DVADESQVVALFEAVDAQWGRLSGLVNNAGVVDVPARVSEMSGQRLRRMFDINVLGSFYC
CCCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
AREAVRRMGLQRGGQGGSIVNVSSAAARLGAAHQYVDYAAAKGAIDVLTVGLAREVAAEG
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
IRVNAVRPGLIDTEIHASGGLPDRVRDLAHQVPMGRGGTPEEVAESIVWLLSDAASYTTM
EEEEEECCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEE
SLLDVSGGR
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]