| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120608932
Identifier: 120608932
GI number: 120608932
Start: 254773
End: 255759
Strand: Reverse
Name: 120608932
Synonym: Aave_0228
Alternate gene names: NA
Gene position: 255759-254773 (Counterclockwise)
Preceding gene: 120608935
Following gene: 120608931
Centisome position: 4.78
GC content: 68.79
Gene sequence:
>987_bases ATGAAGCATTCCCCGTCCCCCCTGCGCCGCGCCCTGCTCGGCGCAACGGTCCTGGCCGCCTGCGCCGCGGCCCCCGCGCT GGCCCAGGACTATCCCGCCAAGACCGTGCGCCTCATCGTGCCGTTCGCTCCCGGCGGCACGACCGACATCGTGGCGCGCG TGGTTTCGCAATCGCTGGGCACCACGCTCGGCCAGCCGGTCGTCGTGGACAACAGGGCCGGCGCGGGCGGCGTGGTCGGC GCGACGGAAATCGCCCGCGCAGCGCCGGACGGCTACACGCTGGGCGTGGCCACGGTGTCCTCCGTGGCCTCCGCGCCCGC GATCAACCCGGCGGTGAAATACAACCCGCTGACGGACTTCACCTCGATCATCAACATGGCGGCCACGCCCAACGTGCTGG CCGTGCACCCGAGCTTCCCGGCGAAGGACTTCAAGTCGTTCATGACCGAGGTCAAGGCCCACCCCGGCAAGTACGCGTTC GCCACCTCCGGCACCGGCGGAATCGGCCACCTGCAGATGGAGCTGTTCAAGTCGCTGTCCGGCCTGGGGCTGGAGCACAT CGGGTACAAGGGCGCCGGCCCGGCCCTCAACGACGCGGTGGCCGGCCAGGTGCCGATGATCTTCGACAACCTGCCGTCCG CGCTGCCGTTCATCAAGGAGAAGCGGCTCATCGCGATCGCGGTGGCGGCGCCGCAGCGCCTGCCCTCGATGCCCGACGTG CCCACCTTCAAGGAAGTCGGCTTCGAGCCCGTGAACCGGATGGCGTTCTACGGCATCCACGGTCCGAAGAACCTGCCGCG CGAAGTGGTGGACAAGATCTCGCAGGCCGTGAAGAAGACCCTGGAAGACCCGGCCGTGCGCCAGCGCATCGAGGATACGG GCTCGCTCGTCGTGGGGAACACGCCGGAGGAGTTCACGGCGCAGACCAAGGCCGAGTACGAGCTCTACAAAGGCGTGGTG GCCAAGCAGAAGCTCAAGCTCGACTGA
Upstream 100 bases:
>100_bases CATGGCATCCGCCCGCGGCATGGCACGCAAGCTGCAAATGGCATTCCCCGTCGCCGCAGCCGGCAGACCGAAAACACCTT ATCCACAGGAGACATCCGAC
Downstream 100 bases:
>100_bases GCCGGCGGGCGGAGCGCCGCCCGTCGCCGATTTCCCACTGCCGTGTTCAAGGTGCGGCAGGTGCTGCCGATACTCCTGAA GGCCTGCACGGGCGCCCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MKHSPSPLRRALLGATVLAACAAAPALAQDYPAKTVRLIVPFAPGGTTDIVARVVSQSLGTTLGQPVVVDNRAGAGGVVG ATEIARAAPDGYTLGVATVSSVASAPAINPAVKYNPLTDFTSIINMAATPNVLAVHPSFPAKDFKSFMTEVKAHPGKYAF ATSGTGGIGHLQMELFKSLSGLGLEHIGYKGAGPALNDAVAGQVPMIFDNLPSALPFIKEKRLIAIAVAAPQRLPSMPDV PTFKEVGFEPVNRMAFYGIHGPKNLPREVVDKISQAVKKTLEDPAVRQRIEDTGSLVVGNTPEEFTAQTKAEYELYKGVV AKQKLKLD
Sequences:
>Translated_328_residues MKHSPSPLRRALLGATVLAACAAAPALAQDYPAKTVRLIVPFAPGGTTDIVARVVSQSLGTTLGQPVVVDNRAGAGGVVG ATEIARAAPDGYTLGVATVSSVASAPAINPAVKYNPLTDFTSIINMAATPNVLAVHPSFPAKDFKSFMTEVKAHPGKYAF ATSGTGGIGHLQMELFKSLSGLGLEHIGYKGAGPALNDAVAGQVPMIFDNLPSALPFIKEKRLIAIAVAAPQRLPSMPDV PTFKEVGFEPVNRMAFYGIHGPKNLPREVVDKISQAVKKTLEDPAVRQRIEDTGSLVVGNTPEEFTAQTKAEYELYKGVV AKQKLKLD >Mature_328_residues MKHSPSPLRRALLGATVLAACAAAPALAQDYPAKTVRLIVPFAPGGTTDIVARVVSQSLGTTLGQPVVVDNRAGAGGVVG ATEIARAAPDGYTLGVATVSSVASAPAINPAVKYNPLTDFTSIINMAATPNVLAVHPSFPAKDFKSFMTEVKAHPGKYAF ATSGTGGIGHLQMELFKSLSGLGLEHIGYKGAGPALNDAVAGQVPMIFDNLPSALPFIKEKRLIAIAVAAPQRLPSMPDV PTFKEVGFEPVNRMAFYGIHGPKNLPREVVDKISQAVKKTLEDPAVRQRIEDTGSLVVGNTPEEFTAQTKAEYELYKGVV AKQKLKLD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34417; Mature: 34417
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHSPSPLRRALLGATVLAACAAAPALAQDYPAKTVRLIVPFAPGGTTDIVARVVSQSLG CCCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH TTLGQPVVVDNRAGAGGVVGATEIARAAPDGYTLGVATVSSVASAPAINPAVKYNPLTDF HHCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHH TSIINMAATPNVLAVHPSFPAKDFKSFMTEVKAHPGKYAFATSGTGGIGHLQMELFKSLS HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH GLGLEHIGYKGAGPALNDAVAGQVPMIFDNLPSALPFIKEKRLIAIAVAAPQRLPSMPDV CCCHHHCCCCCCCCCCHHHHCCCCCHHHHCCCHHHHHHHCCCEEEEEEECHHHCCCCCCC PTFKEVGFEPVNRMAFYGIHGPKNLPREVVDKISQAVKKTLEDPAVRQRIEDTGSLVVGN CCHHHCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECC TPEEFTAQTKAEYELYKGVVAKQKLKLD CCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKHSPSPLRRALLGATVLAACAAAPALAQDYPAKTVRLIVPFAPGGTTDIVARVVSQSLG CCCCHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH TTLGQPVVVDNRAGAGGVVGATEIARAAPDGYTLGVATVSSVASAPAINPAVKYNPLTDF HHCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCHHHH TSIINMAATPNVLAVHPSFPAKDFKSFMTEVKAHPGKYAFATSGTGGIGHLQMELFKSLS HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH GLGLEHIGYKGAGPALNDAVAGQVPMIFDNLPSALPFIKEKRLIAIAVAAPQRLPSMPDV CCCHHHCCCCCCCCCCHHHHCCCCCHHHHCCCHHHHHHHCCCEEEEEEECHHHCCCCCCC PTFKEVGFEPVNRMAFYGIHGPKNLPREVVDKISQAVKKTLEDPAVRQRIEDTGSLVVGN CCHHHCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEECC TPEEFTAQTKAEYELYKGVVAKQKLKLD CCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3299368 [H]