Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 120608916

GI number: 120608916

Start: 232331

End: 232984

Strand: Reverse

Name: yecS [H]

Synonym: Aave_0209

Alternate gene names: 120608916

Gene position: 232984-232331 (Counterclockwise)

Preceding gene: 120608917

Following gene: 120608915

Centisome position: 4.35

GC content: 67.58

Gene sequence:

>654_bases
ATGATCGCCGACATTCCCCTGCTGCCCATCCTGCTCAAGCTGGCCGAAGGCCTTTGGGCCACCCTGCTGCTGTCGCTCAT
GGCTTTCGCGCTGGGCGGCGCGGCCGGCCTGGTGGTGCTGTTCGCCCGCGTGGGCCGGCACCCCGGCCTGCAGCGCGTGA
GCCGCACCTATATCCAGGTGTTCCAGAACACGCCGCTGCTCATGCAGATGTTCCTGGTGTTCTTCGGTGCGTCCATGGCG
GGCTTCGACGTATCGCCCTGGGCGGCCGCCGCCATCGGCCTCACGCTCTACACCAGCGCCTACCTGGCCGAAGTCTGGCG
CGGCTGCGTGCAGGCCATCCCGCGCGGGCAGTGGGAGGCGTCGTCCAGCCTCGCCATGGGCTACTTCCAGCAGATGCGCC
ACGTGGTGCTGCCGCAGGCCGTGCGCCTGGCCGTCGCGCCCACCGTGGGTTTCTCGGTGCAGATCGTCAAGGGCACGGCC
GTGGCCTCGATCATCGGCTTCGAGGATCTCACCAAGCTCGGCTCCATGCTGGCCAACGCCACCTTCCAGCCCTTCCTCAT
CTACGGGCTCGTCGCCGCCGGCTACTTCCTGCTGTGCTGGCCGCTGTCCGCCTGTGCATCCCATCTGGAGAAGAAACTCT
ATGCCGCTCGTTGA

Upstream 100 bases:

>100_bases
CGGCGCTCTACTTCGCGCTGGCCCTGCTGCTGCGCCAGGCGCTGGCCTGGATCGGGCAGCACGTCATCGTGGCGCGCCGC
GCGCCGGCCGGAGACGCCGC

Downstream 100 bases:

>100_bases
CGTCTGCGCCGTGCACAAGTACTACGGCGACAACCATGTGCTCAAGGGCGTCGATCTGCGCGTCGAAAGCGGCCAGGTCG
TGGCCATCATCGGCCGCAGC

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MIADIPLLPILLKLAEGLWATLLLSLMAFALGGAAGLVVLFARVGRHPGLQRVSRTYIQVFQNTPLLMQMFLVFFGASMA
GFDVSPWAAAAIGLTLYTSAYLAEVWRGCVQAIPRGQWEASSSLAMGYFQQMRHVVLPQAVRLAVAPTVGFSVQIVKGTA
VASIIGFEDLTKLGSMLANATFQPFLIYGLVAAGYFLLCWPLSACASHLEKKLYAAR

Sequences:

>Translated_217_residues
MIADIPLLPILLKLAEGLWATLLLSLMAFALGGAAGLVVLFARVGRHPGLQRVSRTYIQVFQNTPLLMQMFLVFFGASMA
GFDVSPWAAAAIGLTLYTSAYLAEVWRGCVQAIPRGQWEASSSLAMGYFQQMRHVVLPQAVRLAVAPTVGFSVQIVKGTA
VASIIGFEDLTKLGSMLANATFQPFLIYGLVAAGYFLLCWPLSACASHLEKKLYAAR
>Mature_217_residues
MIADIPLLPILLKLAEGLWATLLLSLMAFALGGAAGLVVLFARVGRHPGLQRVSRTYIQVFQNTPLLMQMFLVFFGASMA
GFDVSPWAAAAIGLTLYTSAYLAEVWRGCVQAIPRGQWEASSSLAMGYFQQMRHVVLPQAVRLAVAPTVGFSVQIVKGTA
VASIIGFEDLTKLGSMLANATFQPFLIYGLVAAGYFLLCWPLSACASHLEKKLYAAR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=209, Percent_Identity=33.4928229665072, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=30, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87082239, Length=212, Percent_Identity=32.0754716981132, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788645, Length=206, Percent_Identity=26.2135922330097, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787086, Length=210, Percent_Identity=25.2380952380952, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994930, Length=128, Percent_Identity=32.03125, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1788646, Length=182, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=25.1141552511416, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787087, Length=123, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786874, Length=169, Percent_Identity=27.2189349112426, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23415; Mature: 23415

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIADIPLLPILLKLAEGLWATLLLSLMAFALGGAAGLVVLFARVGRHPGLQRVSRTYIQV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
FQNTPLLMQMFLVFFGASMAGFDVSPWAAAAIGLTLYTSAYLAEVWRGCVQAIPRGQWEA
HHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSSLAMGYFQQMRHVVLPQAVRLAVAPTVGFSVQIVKGTAVASIIGFEDLTKLGSMLANA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFLIYGLVAAGYFLLCWPLSACASHLEKKLYAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIADIPLLPILLKLAEGLWATLLLSLMAFALGGAAGLVVLFARVGRHPGLQRVSRTYIQV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
FQNTPLLMQMFLVFFGASMAGFDVSPWAAAAIGLTLYTSAYLAEVWRGCVQAIPRGQWEA
HHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSSLAMGYFQQMRHVVLPQAVRLAVAPTVGFSVQIVKGTAVASIIGFEDLTKLGSMLANA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
TFQPFLIYGLVAAGYFLLCWPLSACASHLEKKLYAAR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]