| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yceF [C]
Identifier: 120599250
GI number: 120599250
Start: 2821771
End: 2822385
Strand: Direct
Name: yceF [C]
Synonym: Sputw3181_2446
Alternate gene names: 120599250
Gene position: 2821771-2822385 (Clockwise)
Preceding gene: 120599238
Following gene: 120599253
Centisome position: 59.93
GC content: 46.18
Gene sequence:
>615_bases ATGACTTACTCTTTTGCGGATATTAGCTTTATGTCAACCCAATTAATCTTAGCTTCAACATCTGTATACCGACAATCTTT ACTACAAAAGCTCGGGTTACCCTTCGAATGCTGCAATCCTAATATTGACGAAACGGCGCAGACCAATGAAACGGCCCACG CTTTAGTTCTGCGCTTAGCCAAAGCGAAAGCCATCGCAGGGGCTGAACAATTTCCTGATGGCCTGATTATTGGCTCCGAT CAAGTCGCTGTCATTGATGACAAGATTATCGGTAAGCCCCATCATTTTGATAACGCCGTCGCACAACTCACTCAAGCCTC AGGCAAAGCCATCACTTTTTATACCGGTCTTGCACTCTATAATGCCAAAACTGGCGCGATGGCCGCCGAGGTTGAACCCT TTACCGTTCATTTTAGGCATCTTAGTCATGCGCAAATTGTAGCCTACGTCGAAAAAGAAGAGCCCTATTATTGCGCGGGC AGTTTTAAGAGCGAAGGTTTGGGCATAGCGTTATTTACAGAGCTCGAAGGCCGTGACCCCAATACCTTAGTTGGCTTACC ACTGATATTACTGACGGAAATGCTGTTAGCCCAAGGAGTAGATGTTCTCGCTTAG
Upstream 100 bases:
>100_bases GGAGGCATACAAGCATAAGCCATCTAAAATAACCGCTTTCGTTGAAAAGAAGTGCCCAAATACGAAACTCTTGCACTCCC TAGCACAGATTGGTCACAAT
Downstream 100 bases:
>100_bases ACGTTTGTCAAGGCTTTGCCCTGTTTATTGAATCGATGACGCGTATCAAAAATACCGAGCTACAGAGTCGTTTTATCGAC GAGAAGATGAGACGTAAATA
Product: maf protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MTYSFADISFMSTQLILASTSVYRQSLLQKLGLPFECCNPNIDETAQTNETAHALVLRLAKAKAIAGAEQFPDGLIIGSD QVAVIDDKIIGKPHHFDNAVAQLTQASGKAITFYTGLALYNAKTGAMAAEVEPFTVHFRHLSHAQIVAYVEKEEPYYCAG SFKSEGLGIALFTELEGRDPNTLVGLPLILLTEMLLAQGVDVLA
Sequences:
>Translated_204_residues MTYSFADISFMSTQLILASTSVYRQSLLQKLGLPFECCNPNIDETAQTNETAHALVLRLAKAKAIAGAEQFPDGLIIGSD QVAVIDDKIIGKPHHFDNAVAQLTQASGKAITFYTGLALYNAKTGAMAAEVEPFTVHFRHLSHAQIVAYVEKEEPYYCAG SFKSEGLGIALFTELEGRDPNTLVGLPLILLTEMLLAQGVDVLA >Mature_203_residues TYSFADISFMSTQLILASTSVYRQSLLQKLGLPFECCNPNIDETAQTNETAHALVLRLAKAKAIAGAEQFPDGLIIGSDQ VAVIDDKIIGKPHHFDNAVAQLTQASGKAITFYTGLALYNAKTGAMAAEVEPFTVHFRHLSHAQIVAYVEKEEPYYCAGS FKSEGLGIALFTELEGRDPNTLVGLPLILLTEMLLAQGVDVLA
Specific function: Unknown
COG id: COG0424
COG function: function code D; Nucleotide-binding protein implicated in inhibition of septum formation
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the maf family [H]
Homologues:
Organism=Escherichia coli, GI87081830, Length=190, Percent_Identity=60, Blast_Score=234, Evalue=3e-63, Organism=Escherichia coli, GI1789646, Length=184, Percent_Identity=34.2391304347826, Blast_Score=92, Evalue=3e-20, Organism=Caenorhabditis elegans, GI193202443, Length=192, Percent_Identity=31.25, Blast_Score=75, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003697 [H]
Pfam domain/function: PF02545 Maf [H]
EC number: NA
Molecular weight: Translated: 22035; Mature: 21903
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYSFADISFMSTQLILASTSVYRQSLLQKLGLPFECCNPNIDETAQTNETAHALVLRLA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KAKAIAGAEQFPDGLIIGSDQVAVIDDKIIGKPHHFDNAVAQLTQASGKAITFYTGLALY HHHHHCCHHHCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEE NAKTGAMAAEVEPFTVHFRHLSHAQIVAYVEKEEPYYCAGSFKSEGLGIALFTELEGRDP CCCCCCEEECCCCEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCEEEEEEEECCCCC NTLVGLPLILLTEMLLAQGVDVLA CEEEHHHHHHHHHHHHHCCCHHCC >Mature Secondary Structure TYSFADISFMSTQLILASTSVYRQSLLQKLGLPFECCNPNIDETAQTNETAHALVLRLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH KAKAIAGAEQFPDGLIIGSDQVAVIDDKIIGKPHHFDNAVAQLTQASGKAITFYTGLALY HHHHHCCHHHCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEEE NAKTGAMAAEVEPFTVHFRHLSHAQIVAYVEKEEPYYCAGSFKSEGLGIALFTELEGRDP CCCCCCEEECCCCEEEEEECCCCEEEEEEEECCCCEEEECCCCCCCCEEEEEEEECCCCC NTLVGLPLILLTEMLLAQGVDVLA CEEEHHHHHHHHHHHHHCCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]