Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 120598817

GI number: 120598817

Start: 2320489

End: 2321820

Strand: Direct

Name: rarA [H]

Synonym: Sputw3181_2003

Alternate gene names: 120598817

Gene position: 2320489-2321820 (Clockwise)

Preceding gene: 120598816

Following gene: 120598818

Centisome position: 49.28

GC content: 46.7

Gene sequence:

>1332_bases
GTGAGTAGTCTATCATTTAATTTTGCCCCTGATTTTCGACCTCTCGCCGCTCGCATGCGGCCAAGGTCAATAGCCGAATA
TATTGGTCAAGCTCATTTGTTAGGTGAAGGTCAACCCCTGCGTAAAGCATTGGAAGCCGGGCGTGCTCATTCCATGATGT
TGTGGGGGCCACCAGGGACAGGCAAAACAACGCTCGCTGAATTAATTGCCCAGTATTCTAATGCACATGTTGAGCGTATT
TCAGCGGTCACCTCTGGCGTAAAAGAGATTCGGGCGGCCATTGAACAGGCAAAAGCTATCGCGGAATCCCGTGGACAACG
TACCTTATTGTTTGTCGATGAAGTCCATCGCTTTAATAAAAGTCAGCAGGATGCTTTTTTGCCCTTTATTGAAGATGGCA
CAGTGATTTTTATCGGCGCCACTACCGAAAATCCCTCGTTTGAAATCAACAATGCCTTACTTTCGCGGGCGAGAGTTTAT
CTTATCAAGCGCTTAAGTAATGATGAGATAGCGCATATCGTGACCCAAGCCTTGGCCGATACTGAGCGTGGCCTTGGTCT
GCGGCAACTCGAAATGCCTGAGAGTGTGCTCATCAAACTTGCTCAACTTTGTGATGGTGATGCGCGTAAGGCGCTCAACT
TACTTGAGTTAATGAGTGATATGGTAAGTGATAACGACACTTTTACCCTTGAAATGCTCGTGCAAGTGGCGGGACACCAA
GTTGCCGGATTCGATAAAAATGGCGATCAATTTTACGATTTGATTTCTGCGGTACATAAATCCATTCGTGGCTCTGCACC
CGATGCCGCACTTTACTGGTATTGCAGGATTTTAGAAGGTGGTGGCGATCCACTCTATGTTGCAAGGCGACTACTTGCGA
TCGCTTCTGAAGATGTGGGCAATGCCGATCCTGCTGCAATGACAATTGCGCTCAATGCTTGGGATTGTTTCCATCGCGTT
GGACCTGCAGAAGGTGAGAGGGCGATTGCACAGGCCATAGTGTATCTGGCGAGCGCTCCTAAAAGTAATGCTGTATATAC
TGCATTTAAAGCGGCTAGGGCACTGGCTCGTGAAACTGGTCAAGAGAGTGTTCCACACCATTTACGTAATGCACCAACAC
AGTTAATGAAAGAAATAGGTATGGGGGAAGGGTACCGATATGCTCACGATGAACCTAATGCCTATGCCAGTGGTGAAAAT
TATTTCCCTGAGTCCCTAAAAACGGCCCAGTTTTACTTTCCCACTGAGCGTGGATTTGAAAAGCGGATTAAGGATAAATT
GATACAATTAACCCAATTAGACCAAGTCAGTGAGAACAAACGTTATGACTAA

Upstream 100 bases:

>100_bases
AAGTCATCACAACTGAAGACAAGGCGTTGTTTAAGTTTGTTTTACCTGAGAATGTCGATATCGATGATCAGCGTCTTAAA
ACGCTTAACTAGGTCAGAGT

Downstream 100 bases:

>100_bases
CGTATTATTAGTTGCATTAGGTGGTTCAATTGGGGCGGTTTTTCGTTATCTTATTTCAATATTCATGATCCAAGTATTTG
GCAGCAGTTTTCCTTTTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSSLSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAQYSNAHVERI
SAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKRLSNDEIAHIVTQALADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDMVSDNDTFTLEMLVQVAGHQ
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWYCRILEGGGDPLYVARRLLAIASEDVGNADPAAMTIALNAWDCFHRV
GPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETGQESVPHHLRNAPTQLMKEIGMGEGYRYAHDEPNAYASGEN
YFPESLKTAQFYFPTERGFEKRIKDKLIQLTQLDQVSENKRYD

Sequences:

>Translated_443_residues
MSSLSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAQYSNAHVERI
SAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVY
LIKRLSNDEIAHIVTQALADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDMVSDNDTFTLEMLVQVAGHQ
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWYCRILEGGGDPLYVARRLLAIASEDVGNADPAAMTIALNAWDCFHRV
GPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETGQESVPHHLRNAPTQLMKEIGMGEGYRYAHDEPNAYASGEN
YFPESLKTAQFYFPTERGFEKRIKDKLIQLTQLDQVSENKRYD
>Mature_442_residues
SSLSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGTGKTTLAELIAQYSNAHVERIS
AVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYL
IKRLSNDEIAHIVTQALADTERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDMVSDNDTFTLEMLVQVAGHQV
AGFDKNGDQFYDLISAVHKSIRGSAPDAALYWYCRILEGGGDPLYVARRLLAIASEDVGNADPAAMTIALNAWDCFHRVG
PAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETGQESVPHHLRNAPTQLMKEIGMGEGYRYAHDEPNAYASGENY
FPESLKTAQFYFPTERGFEKRIKDKLIQLTQLDQVSENKRYD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=450, Percent_Identity=40.2222222222222, Blast_Score=313, Evalue=1e-85,
Organism=Homo sapiens, GI18426904, Length=450, Percent_Identity=36.4444444444444, Blast_Score=260, Evalue=2e-69,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=66.2192393736018, Blast_Score=603, Evalue=1e-174,
Organism=Escherichia coli, GI1786676, Length=231, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=433, Percent_Identity=38.1062355658199, Blast_Score=304, Evalue=2e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=248, Percent_Identity=23.3870967741935, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48963; Mature: 48832

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGT
CCCCCCCCCCCCHHHHHHCCHHHHHHHHCCHHCCCCCHHHHHHHHCCCCCEEEEECCCCC
GKTTLAELIAQYSNAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSNDEIAHIVTQALAD
CCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDMVSDNDTFTLEMLVQVAGHQ
HHHCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWYCRILEGGGDPLYVARRLLAIASEDVG
EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
NADPAAMTIALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETG
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
QESVPHHLRNAPTQLMKEIGMGEGYRYAHDEPNAYASGENYFPESLKTAQFYFPTERGFE
HHHCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEECCCCCCHH
KRIKDKLIQLTQLDQVSENKRYD
HHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SSLSFNFAPDFRPLAARMRPRSIAEYIGQAHLLGEGQPLRKALEAGRAHSMMLWGPPGT
CCCCCCCCCCCHHHHHHCCHHHHHHHHCCHHCCCCCHHHHHHHHCCCCCEEEEECCCCC
GKTTLAELIAQYSNAHVERISAVTSGVKEIRAAIEQAKAIAESRGQRTLLFVDEVHRFNK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCC
SQQDAFLPFIEDGTVIFIGATTENPSFEINNALLSRARVYLIKRLSNDEIAHIVTQALAD
CCCCCCCCEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TERGLGLRQLEMPESVLIKLAQLCDGDARKALNLLELMSDMVSDNDTFTLEMLVQVAGHQ
HHHCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
VAGFDKNGDQFYDLISAVHKSIRGSAPDAALYWYCRILEGGGDPLYVARRLLAIASEDVG
EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
NADPAAMTIALNAWDCFHRVGPAEGERAIAQAIVYLASAPKSNAVYTAFKAARALARETG
CCCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
QESVPHHLRNAPTQLMKEIGMGEGYRYAHDEPNAYASGENYFPESLKTAQFYFPTERGFE
HHHCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEECCCCCCHH
KRIKDKLIQLTQLDQVSENKRYD
HHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]