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The map label for this gene is abnA [H]

Identifier: 120598776

GI number: 120598776

Start: 2269630

End: 2270703

Strand: Direct

Name: abnA [H]

Synonym: Sputw3181_1961

Alternate gene names: 120598776

Gene position: 2269630-2270703 (Clockwise)

Preceding gene: 120598773

Following gene: 120598777

Centisome position: 48.2

GC content: 44.32

Gene sequence:

>1074_bases
ATGCTACGTATTTCTATTACCGCGAGAAAGCACCTTAAGCGACATATGAATAAGCTCCATTGTGCCTTGTTGATCGGGCT
TATGGGTTCGATAGGCAGCGTTAATGCAAAACAGGTCAGTATTCATGATCCTGTTATGGCGAAAGAAGCTGGCAATTATT
ATCTTTTCAGCACGGGACCTGGCATCACCTATTATGCTTCAACGGATAAGGTGCATTGGACATTGGCCGGACGGGTATTT
GATACTGAGCCTACATGGGCACGCGGTGTGGCTCCGGATTTTAATGGGCATTTATGGGCACCGGATATTATTGAACACGA
CGGTTATTTTTATCTTTATTACTCTATTTCCGCTTTTGGTAAAAACACTTCCGCGATCGGCGTAGCCGTTAACAAAACGT
TAGATAAAAACTCAAAAGATTATCAGTGGGTTGATAAGGGAATGGTACTTGAGTCTATTCCCCATCGAGATGCATGGAAT
GCAATTGACCCTAATATTATTGTCGATGAAAAGGGCGCGCCTTGGATGAGTTTTGGTTCATTCTGGCAAGGGCTAAAGCT
GGTGAAGCTCAATCAAGATTTTATCTCCCTTGCTAAACCAGAAGAGTGGCACACTTTAGCCAAACTTGAGCGTCCAGCTT
TACTAAATGATGCCGAACCCGGCCCTGCACAAATCGAAGCGCCGTTTATCTACAAAAAAGATGATTATTACTATCTATTT
GTTTCCTACGGTCTTTGCTGTCGCGCCGATGATAGCACTTACCATTTAGCGATTGGGCGTTCAACCTCTGTCACTGGCCC
TTATCTTGATAAAGAGGGTAAAGATATGGCACAGGGTGGCGGTTCCGTGCTGCTTCGCGGTACAAAAGCTTGGCCTGGCC
TTGGGCACAATAGCGTTTACCAGTTTGAGGGCAAGGACTATTTGGTTTTCCACGCCTATGAGTCTGCGGATAAGGGCTTA
CAAAAGCTCAAAATAGCTGAATTAACATGGAATACCCAAGGTTGGCCTGTCGTTGATCCAAATGCGCTGACTCAATATAA
AAGTGTATTAGTTGACCCAATCGGAAATAAATAA

Upstream 100 bases:

>100_bases
TGTTACTTATTTGTCTTGATAGTATGATAACCTTAATCATCATACAATAGCATAATAGCTATTTTGTTAGAATGGGATCT
CGTTTCATTAAGGAGAAATG

Downstream 100 bases:

>100_bases
TAATGACTCATTCTCTGACAACATTGATGGCCGCGATGGCGCTCACATTTGGCTTTAGCACTGGAGTGGTTGAAGCGTCA
CCTGTGCTTCCTGATAATCA

Product: arabinan endo-1,5-alpha-L-arabinosidase

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MLRISITARKHLKRHMNKLHCALLIGLMGSIGSVNAKQVSIHDPVMAKEAGNYYLFSTGPGITYYASTDKVHWTLAGRVF
DTEPTWARGVAPDFNGHLWAPDIIEHDGYFYLYYSISAFGKNTSAIGVAVNKTLDKNSKDYQWVDKGMVLESIPHRDAWN
AIDPNIIVDEKGAPWMSFGSFWQGLKLVKLNQDFISLAKPEEWHTLAKLERPALLNDAEPGPAQIEAPFIYKKDDYYYLF
VSYGLCCRADDSTYHLAIGRSTSVTGPYLDKEGKDMAQGGGSVLLRGTKAWPGLGHNSVYQFEGKDYLVFHAYESADKGL
QKLKIAELTWNTQGWPVVDPNALTQYKSVLVDPIGNK

Sequences:

>Translated_357_residues
MLRISITARKHLKRHMNKLHCALLIGLMGSIGSVNAKQVSIHDPVMAKEAGNYYLFSTGPGITYYASTDKVHWTLAGRVF
DTEPTWARGVAPDFNGHLWAPDIIEHDGYFYLYYSISAFGKNTSAIGVAVNKTLDKNSKDYQWVDKGMVLESIPHRDAWN
AIDPNIIVDEKGAPWMSFGSFWQGLKLVKLNQDFISLAKPEEWHTLAKLERPALLNDAEPGPAQIEAPFIYKKDDYYYLF
VSYGLCCRADDSTYHLAIGRSTSVTGPYLDKEGKDMAQGGGSVLLRGTKAWPGLGHNSVYQFEGKDYLVFHAYESADKGL
QKLKIAELTWNTQGWPVVDPNALTQYKSVLVDPIGNK
>Mature_357_residues
MLRISITARKHLKRHMNKLHCALLIGLMGSIGSVNAKQVSIHDPVMAKEAGNYYLFSTGPGITYYASTDKVHWTLAGRVF
DTEPTWARGVAPDFNGHLWAPDIIEHDGYFYLYYSISAFGKNTSAIGVAVNKTLDKNSKDYQWVDKGMVLESIPHRDAWN
AIDPNIIVDEKGAPWMSFGSFWQGLKLVKLNQDFISLAKPEEWHTLAKLERPALLNDAEPGPAQIEAPFIYKKDDYYYLF
VSYGLCCRADDSTYHLAIGRSTSVTGPYLDKEGKDMAQGGGSVLLRGTKAWPGLGHNSVYQFEGKDYLVFHAYESADKGL
QKLKIAELTWNTQGWPVVDPNALTQYKSVLVDPIGNK

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 39918; Mature: 39918

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRISITARKHLKRHMNKLHCALLIGLMGSIGSVNAKQVSIHDPVMAKEAGNYYLFSTGP
CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCEEEEECCC
GITYYASTDKVHWTLAGRVFDTEPTWARGVAPDFNGHLWAPDIIEHDGYFYLYYSISAFG
CEEEEECCCEEEEEEEEEEECCCCCHHCCCCCCCCCEECCCHHCCCCCEEEEEEEEEECC
KNTSAIGVAVNKTLDKNSKDYQWVDKGMVLESIPHRDAWNAIDPNIIVDEKGAPWMSFGS
CCCCEEEEEEECCCCCCCCCCEEHHCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHH
FWQGLKLVKLNQDFISLAKPEEWHTLAKLERPALLNDAEPGPAQIEAPFIYKKDDYYYLF
HHCCEEEEEECCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEECCCEEEEE
VSYGLCCRADDSTYHLAIGRSTSVTGPYLDKEGKDMAQGGGSVLLRGTKAWPGLGHNSVY
EECCEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCEE
QFEGKDYLVFHAYESADKGLQKLKIAELTWNTQGWPVVDPNALTQYKSVLVDPIGNK
EECCCEEEEEEECCCHHCHHHHEEEEEEEECCCCCEEECCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLRISITARKHLKRHMNKLHCALLIGLMGSIGSVNAKQVSIHDPVMAKEAGNYYLFSTGP
CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHCCCCEEEEECCC
GITYYASTDKVHWTLAGRVFDTEPTWARGVAPDFNGHLWAPDIIEHDGYFYLYYSISAFG
CEEEEECCCEEEEEEEEEEECCCCCHHCCCCCCCCCEECCCHHCCCCCEEEEEEEEEECC
KNTSAIGVAVNKTLDKNSKDYQWVDKGMVLESIPHRDAWNAIDPNIIVDEKGAPWMSFGS
CCCCEEEEEEECCCCCCCCCCEEHHCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCHHHH
FWQGLKLVKLNQDFISLAKPEEWHTLAKLERPALLNDAEPGPAQIEAPFIYKKDDYYYLF
HHCCEEEEEECCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECCEEEECCCEEEEE
VSYGLCCRADDSTYHLAIGRSTSVTGPYLDKEGKDMAQGGGSVLLRGTKAWPGLGHNSVY
EECCEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCEEEEEECCCCCCCCCCCEE
QFEGKDYLVFHAYESADKGLQKLKIAELTWNTQGWPVVDPNALTQYKSVLVDPIGNK
EECCCEEEEEEECCCHHCHHHHEEEEEEEECCCCCEEECCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]