| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yfiK [C]
Identifier: 120598693
GI number: 120598693
Start: 2161432
End: 2162058
Strand: Direct
Name: yfiK [C]
Synonym: Sputw3181_1878
Alternate gene names: 120598693
Gene position: 2161432-2162058 (Clockwise)
Preceding gene: 120598691
Following gene: 120598694
Centisome position: 45.91
GC content: 41.79
Gene sequence:
>627_bases ATGAATATTGCATTTTTTTACGACACACAATTATGGAGTTTAATGACTTCGGCGGCGCTATTTTGTGCCACGATGACAAT GACACCCGGCCCGAATAATATTCTATTGGCTAGCTCAGGTGCGCATTTTGGCGTATTACGGACTGTGCCACATATTGCGG GGATCCGCTTAGGCTCGACCTCTTTGCATCTATCGGTATTGCTTGGTCTTGGTGCTTTGTTTGCAACAGTCCCCCTATTG CATCAAGTGCTGAAATACTTCGCTTTAGCTTACTTGTTGTATTTAGCTTACAGATTAGTGACTTTACCAGTGCAAGAAAC TTATCTAGATGATGGGCGAAAACCAATGACGCTAATAGAAGCTGCATTGTTTCAATGGATTAACCCTAAATCTTGGATGT CGACAATTACCCTTTGTAGTGCTTTTACATTAAGTGGGGAGGGCTTTTGGTTAAGTGCTTTTCTCGGCGTATTAGTGTTT AACTTAGTGGGATTTCCAGCATCATTTACTTGGGTATTGATGGGCGCAGCGATCAGTAAAAAACTCAATACCGCTAAACG TAAGCGACACTTCAATTGGTTTATGGGTAGTTTACTTCTGGTGTCTTTACCGATGATTTTACGTTAG
Upstream 100 bases:
>100_bases GTACCCATAACAATAAATCCATTGATCTCTAATATTCACCGTATATTATTTGTTGAATATTTTTATGTCAAACAATGTAT GCATACAATTATGGGTAATT
Downstream 100 bases:
>100_bases CTTAAATTTCAGAACCCTTAAATCCATAAATATTCTGGAAAACAAACTCGCGTAACGATTGGCTTTATGTCATAACCAAC CTAATATTGATGAATTTTTT
Product: lysine exporter protein (LysE/YggA)
Products: NA
Alternate protein names: Lysine Exporter Protein; Amino Acid Transporter LysE; Transporter LysE Family; Transporter Protein; Translocator Protein LysE Family; RhtB Family Transporter; LysE Family Protein; Amino Acid Efflux Protein LysE Family; Amino Acid Efflux Protein; Transporter LysE Family Protein; Threonine Efflux Protein; Transmembrane Transporter Protein; Amino Acid Efflux Pump RhtB Family Protein; LysE Type Translocator Family; LOW QUALITY PROTEIN Lysine Exporter Protein LysE; Neutral Amino-Acid Efflux System; Transporter-LysE Family; Transmembrane Transporter Protein LysE Type Translocator; LysE Family Transporter
Number of amino acids: Translated: 208; Mature: 208
Protein sequence:
>208_residues MNIAFFYDTQLWSLMTSAALFCATMTMTPGPNNILLASSGAHFGVLRTVPHIAGIRLGSTSLHLSVLLGLGALFATVPLL HQVLKYFALAYLLYLAYRLVTLPVQETYLDDGRKPMTLIEAALFQWINPKSWMSTITLCSAFTLSGEGFWLSAFLGVLVF NLVGFPASFTWVLMGAAISKKLNTAKRKRHFNWFMGSLLLVSLPMILR
Sequences:
>Translated_208_residues MNIAFFYDTQLWSLMTSAALFCATMTMTPGPNNILLASSGAHFGVLRTVPHIAGIRLGSTSLHLSVLLGLGALFATVPLL HQVLKYFALAYLLYLAYRLVTLPVQETYLDDGRKPMTLIEAALFQWINPKSWMSTITLCSAFTLSGEGFWLSAFLGVLVF NLVGFPASFTWVLMGAAISKKLNTAKRKRHFNWFMGSLLLVSLPMILR >Mature_208_residues MNIAFFYDTQLWSLMTSAALFCATMTMTPGPNNILLASSGAHFGVLRTVPHIAGIRLGSTSLHLSVLLGLGALFATVPLL HQVLKYFALAYLLYLAYRLVTLPVQETYLDDGRKPMTLIEAALFQWINPKSWMSTITLCSAFTLSGEGFWLSAFLGVLVF NLVGFPASFTWVLMGAAISKKLNTAKRKRHFNWFMGSLLLVSLPMILR
Specific function: Unknown
COG id: COG1280
COG function: function code E; Putative threonine efflux protein
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23043; Mature: 23043
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIAFFYDTQLWSLMTSAALFCATMTMTPGPNNILLASSGAHFGVLRTVPHIAGIRLGST CCEEEEEHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCHHHHHHHHHHHCEEECCH SLHLSVLLGLGALFATVPLLHQVLKYFALAYLLYLAYRLVTLPVQETYLDDGRKPMTLIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHH AALFQWINPKSWMSTITLCSAFTLSGEGFWLSAFLGVLVFNLVGFPASFTWVLMGAAISK HHHHHHCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH KLNTAKRKRHFNWFMGSLLLVSLPMILR HHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNIAFFYDTQLWSLMTSAALFCATMTMTPGPNNILLASSGAHFGVLRTVPHIAGIRLGST CCEEEEEHHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCCCHHHHHHHHHHHCEEECCH SLHLSVLLGLGALFATVPLLHQVLKYFALAYLLYLAYRLVTLPVQETYLDDGRKPMTLIE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHH AALFQWINPKSWMSTITLCSAFTLSGEGFWLSAFLGVLVFNLVGFPASFTWVLMGAAISK HHHHHHCCHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH KLNTAKRKRHFNWFMGSLLLVSLPMILR HHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA