| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598691
Identifier: 120598691
GI number: 120598691
Start: 2157974
End: 2159848
Strand: Direct
Name: 120598691
Synonym: Sputw3181_1876
Alternate gene names: NA
Gene position: 2157974-2159848 (Clockwise)
Preceding gene: 120598686
Following gene: 120598693
Centisome position: 45.83
GC content: 44.0
Gene sequence:
>1875_bases ATGAAAATAAGAACATTCCCTCTTACAGCGGCTGTTATGGGTAGCTTATTGCTTTGTGCTTGCAGTGGTGATGACGGTGC TACGGGTGATAAAGGCGACAATGGACTGAGTTCACTTGTTAACGTGACTGCATTGAATGTTGGGGATGCTAATTGTCCCG CGGGAGGTCAGCGTATTGAGACCGGATTAGATGTTAATCGCAATGGGGTATTAGATGAAAGTGAAGTAGACCCCACACAA ATACAGTTTGTGTGTCAGCCTCAAGTAGTAGGATTAACTGCAGAGTTGATTGGTCGGCATCAGACGGGCATTTATGGATT AAGTGCCGCCGAGATTGTTGAATACCATAGTGCTTCAAATCGTATTTTTGTCGTTAATGCGATCAGCGGTAAAGTCGATA TTATTGATGGTAGTTTATTAGCAACCTCATCAGCAGCCACTGAACCCTTGGCATTGAATAATCTCGATAAACTAGCAGAA CTCGATGTTGCTAAAGATGTGGGGCAAACCTTTATGGGGAGCGTCAATAGCGTTAGCATTTCGGGTAACTTGCTTGCTGC GGCAATTGAACGTGGGGATGCGGCGGGTAATAAAACGCAAGCTAATGGTTTTGTAGCCTTTTATCAGCTTAACGGTGCAG ATACTCCACAGTTTATCAGTGCCGTTGAAGTTGGTGCCTTGCCGGATAATGTGGTATTTACCCATGATGGCAAAATGGTA GTAGTCGCCAATGAAGGCGAACCCAATTCATCCTATACCTTAGATCCTGAAGGCAGCATTGCGCTTATTGCTATTACAGA GGGTAAACCTGCAGCAACGGCTACCATCATAGGCTTTAGTGATTTTAATCAAGGTGGTACACGTCATAGTGAGATCACTG CGGACATCAAAATTAATGGCCCAATGGCCAGTGTGGCACAGGATTTAGAACCTGAATATATCGCGGTAAGCCAAGATAAC CGTCGTGCATTTGTCAGCTTACAAGAGAACAATGCCATTGCTGTCATTGATATCGTCAATGCCAAAGTTGCAAAAATTTT ACCCTTAGGTCTGAAGGATTATGGGCTTGAAGTGAATAAAATTGATGCGAGTGATAAAGATGACCGAGTGAACTTGCAAA GCTACACCGGCGTTTACGGCATGTATCAACCCGACACTCTTGCGACGTACCGCTGGAATAACACAGACTTTATTGTCACA GCTAATGAAGGTGACTCCCGTGACTACAGTGCTTTTTCGGAAGAAGCCCGAGCAGGGGATTTAATACTCGATGCCAATCA TCCCCAATTTGCAGCCGCTAAGGATAAAACCCAATTAGCACGTCTTAAGGTAACGACAAGCATGGGGGATGATGATAAAG ATGGCGATTACGATAGGATTGTTAGTTTTGGTGCTCGTTCATTCTCGATTTGGACTGCCGATGGTCAACAAGTGTTTGAC AGTGGCAGTGATTTTGAACGTATTACCGCAGCACTATTAGGTAATAAATTCAATAATAACAACGAAGAAAATAAAGGTGA TAGCCGCAGTGATGATAAAGGCCCGGAGCCAGAAGCCTTGGCCTTAGGTCAAATTGGCCAGCGTCTTTATGCCTTTATTG GTTTGGAGCGAACTTCGGGTTTTATGATTTATGACGTGACGAATCCTTTCGATGTGCATTTTATTGATTATGTCGTCAAT CGTGATTTTGACGCTGACTTTACGATTAATACTGAAACTGGAGTGGTTAAAGGTGATGCGACTCTGGCGGGGGATTTAGG CCCAGAAGGGATGAAGTTTGTGAGTGCTGATAAGAGTCCTAACAGCAAACCTTTGCTGATTATTGGCAACGAGGTTAGCG GCAGCACCAGTGTTTATCAGTTGAATGTAAAATAA
Upstream 100 bases:
>100_bases CCTAAGTGTCACCATATTGTCATTCCTGCGACTTTTTCCTTCTTTAGTTTAATGGGCTTTAGTTTCTCTTTACCCCATTC TGACAGGAAATAATATAACG
Downstream 100 bases:
>100_bases CGGTTTAGTATACCCATCCAGATTAACGCCAACAGCAGTAATGCTGCTGGCGTTATTTTTAGTAGATTAGCGCGATTTTC AGTTTATCTTGCATTTTGCG
Product: alkaline phosphatase
Products: NA
Alternate protein names: Alkaline Phosphatase-Like Protein; 5-Nucleotidase Domain Protein; 5-Nucleotidase Domain-Containing Protein; Transcriptional Regulator MerR Family Protein; MerR Family Transcriptional Regulator; Endonuclease/Exonuclease/Phosphatase; CHU Large Protein; LPXTG-Motif Cell Wall Anchor Domain Protein; 5-Nucleotidase C-Terminal Domain Protein; Collagen Triple Helix Repeat Protein; 5-Nucleotidase/2' 3'-Cyclic Phosphodiesterase; Atypical Alkaline Phosphatase With Phytase-Like Insertion; Metallophosphoesterase; PEP-CTERM Exosortase Interaction Domain Protein; Ig Domain Domain Protein; Ig Family Protein
Number of amino acids: Translated: 624; Mature: 624
Protein sequence:
>624_residues MKIRTFPLTAAVMGSLLLCACSGDDGATGDKGDNGLSSLVNVTALNVGDANCPAGGQRIETGLDVNRNGVLDESEVDPTQ IQFVCQPQVVGLTAELIGRHQTGIYGLSAAEIVEYHSASNRIFVVNAISGKVDIIDGSLLATSSAATEPLALNNLDKLAE LDVAKDVGQTFMGSVNSVSISGNLLAAAIERGDAAGNKTQANGFVAFYQLNGADTPQFISAVEVGALPDNVVFTHDGKMV VVANEGEPNSSYTLDPEGSIALIAITEGKPAATATIIGFSDFNQGGTRHSEITADIKINGPMASVAQDLEPEYIAVSQDN RRAFVSLQENNAIAVIDIVNAKVAKILPLGLKDYGLEVNKIDASDKDDRVNLQSYTGVYGMYQPDTLATYRWNNTDFIVT ANEGDSRDYSAFSEEARAGDLILDANHPQFAAAKDKTQLARLKVTTSMGDDDKDGDYDRIVSFGARSFSIWTADGQQVFD SGSDFERITAALLGNKFNNNNEENKGDSRSDDKGPEPEALALGQIGQRLYAFIGLERTSGFMIYDVTNPFDVHFIDYVVN RDFDADFTINTETGVVKGDATLAGDLGPEGMKFVSADKSPNSKPLLIIGNEVSGSTSVYQLNVK
Sequences:
>Translated_624_residues MKIRTFPLTAAVMGSLLLCACSGDDGATGDKGDNGLSSLVNVTALNVGDANCPAGGQRIETGLDVNRNGVLDESEVDPTQ IQFVCQPQVVGLTAELIGRHQTGIYGLSAAEIVEYHSASNRIFVVNAISGKVDIIDGSLLATSSAATEPLALNNLDKLAE LDVAKDVGQTFMGSVNSVSISGNLLAAAIERGDAAGNKTQANGFVAFYQLNGADTPQFISAVEVGALPDNVVFTHDGKMV VVANEGEPNSSYTLDPEGSIALIAITEGKPAATATIIGFSDFNQGGTRHSEITADIKINGPMASVAQDLEPEYIAVSQDN RRAFVSLQENNAIAVIDIVNAKVAKILPLGLKDYGLEVNKIDASDKDDRVNLQSYTGVYGMYQPDTLATYRWNNTDFIVT ANEGDSRDYSAFSEEARAGDLILDANHPQFAAAKDKTQLARLKVTTSMGDDDKDGDYDRIVSFGARSFSIWTADGQQVFD SGSDFERITAALLGNKFNNNNEENKGDSRSDDKGPEPEALALGQIGQRLYAFIGLERTSGFMIYDVTNPFDVHFIDYVVN RDFDADFTINTETGVVKGDATLAGDLGPEGMKFVSADKSPNSKPLLIIGNEVSGSTSVYQLNVK >Mature_624_residues MKIRTFPLTAAVMGSLLLCACSGDDGATGDKGDNGLSSLVNVTALNVGDANCPAGGQRIETGLDVNRNGVLDESEVDPTQ IQFVCQPQVVGLTAELIGRHQTGIYGLSAAEIVEYHSASNRIFVVNAISGKVDIIDGSLLATSSAATEPLALNNLDKLAE LDVAKDVGQTFMGSVNSVSISGNLLAAAIERGDAAGNKTQANGFVAFYQLNGADTPQFISAVEVGALPDNVVFTHDGKMV VVANEGEPNSSYTLDPEGSIALIAITEGKPAATATIIGFSDFNQGGTRHSEITADIKINGPMASVAQDLEPEYIAVSQDN RRAFVSLQENNAIAVIDIVNAKVAKILPLGLKDYGLEVNKIDASDKDDRVNLQSYTGVYGMYQPDTLATYRWNNTDFIVT ANEGDSRDYSAFSEEARAGDLILDANHPQFAAAKDKTQLARLKVTTSMGDDDKDGDYDRIVSFGARSFSIWTADGQQVFD SGSDFERITAALLGNKFNNNNEENKGDSRSDDKGPEPEALALGQIGQRLYAFIGLERTSGFMIYDVTNPFDVHFIDYVVN RDFDADFTINTETGVVKGDATLAGDLGPEGMKFVSADKSPNSKPLLIIGNEVSGSTSVYQLNVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66374; Mature: 66374
Theoretical pI: Translated: 4.17; Mature: 4.17
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRTFPLTAAVMGSLLLCACSGDDGATGDKGDNGLSSLVNVTALNVGDANCPAGGQRIE CEEEEECCHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCEEE TGLDVNRNGVLDESEVDPTQIQFVCQPQVVGLTAELIGRHQTGIYGLSAAEIVEYHSASN CCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEHHHHCCCCCCEEECCHHHHHHHHCCCC RIFVVNAISGKVDIIDGSLLATSSAATEPLALNNLDKLAELDVAKDVGQTFMGSVNSVSI EEEEEEECCCEEEEECCCEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCEEEE SGNLLAAAIERGDAAGNKTQANGFVAFYQLNGADTPQFISAVEVGALPDNVVFTHDGKMV CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHEEECCCCCCEEEEECCCEE VVANEGEPNSSYTLDPEGSIALIAITEGKPAATATIIGFSDFNQGGTRHSEITADIKING EEECCCCCCCCEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECC PMASVAQDLEPEYIAVSQDNRRAFVSLQENNAIAVIDIVNAKVAKILPLGLKDYGLEVNK CHHHHHHHCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEHEEECCCHHHCEEEEE IDASDKDDRVNLQSYTGVYGMYQPDTLATYRWNNTDFIVTANEGDSRDYSAFSEEARAGD ECCCCCCCEEEEEHHCCEEEEECCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHCCCCC LILDANHPQFAAAKDKTQLARLKVTTSMGDDDKDGDYDRIVSFGARSFSIWTADGQQVFD EEEECCCCCEECCCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHC SGSDFERITAALLGNKFNNNNEENKGDSRSDDKGPEPEALALGQIGQRLYAFIGLERTSG CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHEEEEEEEECCCC FMIYDVTNPFDVHFIDYVVNRDFDADFTINTETGVVKGDATLAGDLGPEGMKFVSADKSP EEEEECCCCCCEEEEEEEECCCCCCCEEEECCCCEEECCCEEECCCCCCCCEEEECCCCC NSKPLLIIGNEVSGSTSVYQLNVK CCCEEEEECCCCCCCCEEEEEEEC >Mature Secondary Structure MKIRTFPLTAAVMGSLLLCACSGDDGATGDKGDNGLSSLVNVTALNVGDANCPAGGQRIE CEEEEECCHHHHHCCEEEEEECCCCCCCCCCCCCHHHHHEEEEEEECCCCCCCCCCCEEE TGLDVNRNGVLDESEVDPTQIQFVCQPQVVGLTAELIGRHQTGIYGLSAAEIVEYHSASN CCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEHHHHCCCCCCEEECCHHHHHHHHCCCC RIFVVNAISGKVDIIDGSLLATSSAATEPLALNNLDKLAELDVAKDVGQTFMGSVNSVSI EEEEEEECCCEEEEECCCEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCEEEE SGNLLAAAIERGDAAGNKTQANGFVAFYQLNGADTPQFISAVEVGALPDNVVFTHDGKMV CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHEEECCCCCCEEEEECCCEE VVANEGEPNSSYTLDPEGSIALIAITEGKPAATATIIGFSDFNQGGTRHSEITADIKING EEECCCCCCCCEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECC PMASVAQDLEPEYIAVSQDNRRAFVSLQENNAIAVIDIVNAKVAKILPLGLKDYGLEVNK CHHHHHHHCCCCEEEEECCCCEEEEEEECCCCEEEEEECCCCEEHEEECCCHHHCEEEEE IDASDKDDRVNLQSYTGVYGMYQPDTLATYRWNNTDFIVTANEGDSRDYSAFSEEARAGD ECCCCCCCEEEEEHHCCEEEEECCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHCCCCC LILDANHPQFAAAKDKTQLARLKVTTSMGDDDKDGDYDRIVSFGARSFSIWTADGQQVFD EEEECCCCCEECCCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHC SGSDFERITAALLGNKFNNNNEENKGDSRSDDKGPEPEALALGQIGQRLYAFIGLERTSG CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHEEEEEEEECCCC FMIYDVTNPFDVHFIDYVVNRDFDADFTINTETGVVKGDATLAGDLGPEGMKFVSADKSP EEEEECCCCCCEEEEEEEECCCCCCCEEEECCCCEEECCCEEECCCCCCCCEEEECCCCC NSKPLLIIGNEVSGSTSVYQLNVK CCCEEEEECCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA