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The map label for this gene is rnk [H]

Identifier: 120598560

GI number: 120598560

Start: 2008556

End: 2008963

Strand: Direct

Name: rnk [H]

Synonym: Sputw3181_1743

Alternate gene names: 120598560

Gene position: 2008556-2008963 (Clockwise)

Preceding gene: 120598559

Following gene: 120598561

Centisome position: 42.66

GC content: 42.4

Gene sequence:

>408_bases
GTGAATACACCTAACATTATTATTTCTGAAATCGATTTGGAAAGATTAGAACGATTATTAGAGTCACTACCAGCGAATGC
ATTTCCAGGGAAAACGGCATTAGAGGCTGAACTTGATAGAGCAGAGATAGTCCCCGCGACCGAAATGCCTGACAATGTCG
TTACAATGAACTCGTTGGTTAAATTTAGTGTTTCATCCAGTAACGATACTTTTTGTCTACGGTTAGTGTATCCCAAGGAT
GCTAATGGCGAAGGAACTATTTCCATTCTTGCCCCAGTAGGCAGCGCATTGCTTGGATTATCACAAGGTGATGATATTGA
ATGGCCAGGTCCTGGCGGCACTATGGTTAAGGTTCGTATTGAAGAGATTGTATATCAACCAGAGCGTAGTGGCGATTTTC
ACCGCTAA

Upstream 100 bases:

>100_bases
TATTTTTTATGGCGCTTATCGCAAGGAAAGGGTAAGCAATGGTTTGATGTTTGCCACCGCTATGGGCTACTACATCAGGT
TTTTTAATGAGGGAAAGACT

Downstream 100 bases:

>100_bases
TCAATTGGCGTAAAGTAAGTGTGTTACTTTACGCCTTATTTTCAGCAGTGGTATAGGGAGTTGAGATGATAACGCAGACC
GAACGCTTAATTATTAGGCC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNTPNIIISEIDLERLERLLESLPANAFPGKTALEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKD
ANGEGTISILAPVGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVYQPERSGDFHR

Sequences:

>Translated_135_residues
MNTPNIIISEIDLERLERLLESLPANAFPGKTALEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKD
ANGEGTISILAPVGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVYQPERSGDFHR
>Mature_135_residues
MNTPNIIISEIDLERLERLLESLPANAFPGKTALEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKD
ANGEGTISILAPVGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVYQPERSGDFHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=46.2686567164179, Blast_Score=115, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14699; Mature: 14699

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPNIIISEIDLERLERLLESLPANAFPGKTALEAELDRAEIVPATEMPDNVVTMNSLV
CCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHCCCCCCCCCCEEEECCEE
KFSVSSSNDTFCLRLVYPKDANGEGTISILAPVGSALLGLSQGDDIEWPGPGGTMVKVRI
EEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCEEEEEE
EEIVYQPERSGDFHR
HHHEECCCCCCCCCC
>Mature Secondary Structure
MNTPNIIISEIDLERLERLLESLPANAFPGKTALEAELDRAEIVPATEMPDNVVTMNSLV
CCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHCCCCCCCCCCEEEECCEE
KFSVSSSNDTFCLRLVYPKDANGEGTISILAPVGSALLGLSQGDDIEWPGPGGTMVKVRI
EEEECCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCEEEEEE
EEIVYQPERSGDFHR
HHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]