| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is hemH
Identifier: 120598529
GI number: 120598529
Start: 1969906
End: 1970949
Strand: Direct
Name: hemH
Synonym: Sputw3181_1712
Alternate gene names: 120598529
Gene position: 1969906-1970949 (Clockwise)
Preceding gene: 120598528
Following gene: 120598530
Centisome position: 41.84
GC content: 44.73
Gene sequence:
>1044_bases ATGTTAGCCTGCCGAGGTAATTGGCTGATAAAAGGTAACACATTGACTTCTCCCTCTCCTGCGTTTGGCGTGTTATTAGT AAATCTTGGTACGCCCGATGAACCTACTCCAAAAGCGGTTAAGCGGTTTCTCAAGCAGTTTTTAAGTGATCCTCGGGTCG TCGATCTCTCGCCTTGGCTGTGGCAACCGCTGTTAAATGGCATTATTCTCAATACGCGTCCTGCGAAAGTGGCCAAGTTA TATCAGAGTATTTGGACAGATGAAGGCTCGCCCTTAATGGTGTTAAGCTCACGCCAAGCCCAAAAATTGGCGGTGGATTT AAGCGCGACCTTTAATCAAGATATTCCCGTTGAATTGGGGATGAGCTACGGTAATCCGTCGATTGATAGCGGTTTTGCGA GGCTTAAGGCACAAGGTGCTGAGCGGATTGTAGTCTTACCTCTTTATCCGCAATATTCTTGCTCGACGGTAGCAAGCGTG TTTGATGCTGTTGCCAGTTATCTTAAAACCGTGCGCGATATGCCGGAACTTCGTTTTAATAAACACTATTTTGACCATGA AGCTTATATCGCAGCACTTGCCCACAGTGTCAAACGCCATTGGAAAACCTATGGTCAAGCGGACAAATTACTGCTTTCGT TCCACGGCATTCCACTACGTTATGTGAAAGAGGGCGATCCATACCGCGAACAATGTCTTGTGACAGCGAAACTTTTGGCA CAAAAGCTTGAGTTGAATGAAGCACAATGGCAGGTTTGTTTTCAATCGCGCTTTGGTCGTGAAGAATGGCTTACCCCCTA TGCTGATGAATTGCTTGCTAAGTTACCTTCACAGGGCATTAAAAGTGTTGATGTCATTTGTCCCGCTTTTGCAACCGATT GCCTAGAAACCCTAGAAGAGATTTCTATTGGTGGCAAAGAAACCTTCTTACATGCGGGTGGTGAAACATATCGTTTTATT CCCTGCCTTAATGATGATGAGATGCATATAGAATTATTAAGGCAATTAGTCCAAGAACAGGCACATTCTTGGAATTATCC CTAA
Upstream 100 bases:
>100_bases TTGCCAGTGTACTTAAATAAGCCACATTAGCTAAATTCGAGAACAAGTTCTCATATTAAGAAAAAGCCTGCCTAAGCAGG CTTTTTTTATGTGTGACTGA
Downstream 100 bases:
>100_bases GCGCTGAAAATGCAGGACTAAGGCTGTTTAAGGAGTTAAAGGAGGCGAACTACATTTTTAAGTAAACATTGCGAAGCATT GTTGATCCCCCTAGTTTCAT
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase 1; Protoheme ferro-lyase 1 [H]
Number of amino acids: Translated: 347; Mature: 347
Protein sequence:
>347_residues MLACRGNWLIKGNTLTSPSPAFGVLLVNLGTPDEPTPKAVKRFLKQFLSDPRVVDLSPWLWQPLLNGIILNTRPAKVAKL YQSIWTDEGSPLMVLSSRQAQKLAVDLSATFNQDIPVELGMSYGNPSIDSGFARLKAQGAERIVVLPLYPQYSCSTVASV FDAVASYLKTVRDMPELRFNKHYFDHEAYIAALAHSVKRHWKTYGQADKLLLSFHGIPLRYVKEGDPYREQCLVTAKLLA QKLELNEAQWQVCFQSRFGREEWLTPYADELLAKLPSQGIKSVDVICPAFATDCLETLEEISIGGKETFLHAGGETYRFI PCLNDDEMHIELLRQLVQEQAHSWNYP
Sequences:
>Translated_347_residues MLACRGNWLIKGNTLTSPSPAFGVLLVNLGTPDEPTPKAVKRFLKQFLSDPRVVDLSPWLWQPLLNGIILNTRPAKVAKL YQSIWTDEGSPLMVLSSRQAQKLAVDLSATFNQDIPVELGMSYGNPSIDSGFARLKAQGAERIVVLPLYPQYSCSTVASV FDAVASYLKTVRDMPELRFNKHYFDHEAYIAALAHSVKRHWKTYGQADKLLLSFHGIPLRYVKEGDPYREQCLVTAKLLA QKLELNEAQWQVCFQSRFGREEWLTPYADELLAKLPSQGIKSVDVICPAFATDCLETLEEISIGGKETFLHAGGETYRFI PCLNDDEMHIELLRQLVQEQAHSWNYP >Mature_347_residues MLACRGNWLIKGNTLTSPSPAFGVLLVNLGTPDEPTPKAVKRFLKQFLSDPRVVDLSPWLWQPLLNGIILNTRPAKVAKL YQSIWTDEGSPLMVLSSRQAQKLAVDLSATFNQDIPVELGMSYGNPSIDSGFARLKAQGAERIVVLPLYPQYSCSTVASV FDAVASYLKTVRDMPELRFNKHYFDHEAYIAALAHSVKRHWKTYGQADKLLLSFHGIPLRYVKEGDPYREQCLVTAKLLA QKLELNEAQWQVCFQSRFGREEWLTPYADELLAKLPSQGIKSVDVICPAFATDCLETLEEISIGGKETFLHAGGETYRFI PCLNDDEMHIELLRQLVQEQAHSWNYP
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499025, Length=337, Percent_Identity=24.9258160237389, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI60499021, Length=337, Percent_Identity=24.9258160237389, Blast_Score=107, Evalue=2e-23, Organism=Escherichia coli, GI1786681, Length=315, Percent_Identity=52.3809523809524, Blast_Score=321, Evalue=4e-89, Organism=Saccharomyces cerevisiae, GI6324750, Length=331, Percent_Identity=24.4712990936556, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI17864156, Length=339, Percent_Identity=24.188790560472, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI24651774, Length=267, Percent_Identity=23.2209737827715, Blast_Score=85, Evalue=7e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 39130; Mature: 39130
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLACRGNWLIKGNTLTSPSPAFGVLLVNLGTPDEPTPKAVKRFLKQFLSDPRVVDLSPWL CEEECCCEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCHHH WQPLLNGIILNTRPAKVAKLYQSIWTDEGSPLMVLSSRQAQKLAVDLSATFNQDIPVELG HHHHHCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHEEEEHHCCCCCCCCEEC MSYGNPSIDSGFARLKAQGAERIVVLPLYPQYSCSTVASVFDAVASYLKTVRDMPELRFN CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHC KHYFDHEAYIAALAHSVKRHWKTYGQADKLLLSFHGIPLRYVKEGDPYREQCLVTAKLLA CHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH QKLELNEAQWQVCFQSRFGREEWLTPYADELLAKLPSQGIKSVDVICPAFATDCLETLEE HHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ISIGGKETFLHAGGETYRFIPCLNDDEMHIELLRQLVQEQAHSWNYP HCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MLACRGNWLIKGNTLTSPSPAFGVLLVNLGTPDEPTPKAVKRFLKQFLSDPRVVDLSPWL CEEECCCEEEECCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEECCHHH WQPLLNGIILNTRPAKVAKLYQSIWTDEGSPLMVLSSRQAQKLAVDLSATFNQDIPVELG HHHHHCCEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHEEEEHHCCCCCCCCEEC MSYGNPSIDSGFARLKAQGAERIVVLPLYPQYSCSTVASVFDAVASYLKTVRDMPELRFN CCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHC KHYFDHEAYIAALAHSVKRHWKTYGQADKLLLSFHGIPLRYVKEGDPYREQCLVTAKLLA CHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH QKLELNEAQWQVCFQSRFGREEWLTPYADELLAKLPSQGIKSVDVICPAFATDCLETLEE HHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH ISIGGKETFLHAGGETYRFIPCLNDDEMHIELLRQLVQEQAHSWNYP HCCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]