| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is gmhB [H]
Identifier: 120598473
GI number: 120598473
Start: 1898592
End: 1899143
Strand: Direct
Name: gmhB [H]
Synonym: Sputw3181_1656
Alternate gene names: 120598473
Gene position: 1898592-1899143 (Clockwise)
Preceding gene: 120598470
Following gene: 120598477
Centisome position: 40.32
GC content: 43.3
Gene sequence:
>552_bases GTGGTTGCAGTCAATCGAGCCGTTTTTTTAGACCGTGATGGTGTTATCAATAAAGATCATGGTTATGTACATCAAGTTGA TGATTTTGAATATATCGAAGGTGTGTTCGAAGCATGTCTCGCATTAAAAAAAATGGGCTACAAGTTAGTCGTCGTCACTA ACCAATCCGGTATAGCCCGCGGTATGTACAGTGAAGATCAGTTTCACAGTTTAACAGAGTGGATGGATTGGAACTTTGCC GATAAAGGGGTTGATCTCGATGGCATCTACTACTGCCCGCACCATGCAGAAAAGGGGATGGGTGAATATAAAGTTGATTG TGATTGCCGTAAACCCAAGCCTGGTATGCTTAACGATGCCGCTAAATTCTTAAAAGTCGACTTATCACAGTCAGTGATGG TGGGTGATAAAGCTGATGATATGCAGGCGGCAAAAGCGGCAGGTGTGCCAACACGTATATTAGTGCGTAGCGGTAAAGTG ATTGCAGACAGTAGTGATGCAACAATAGTGCTCGATAGTATTGCTGATGTACCTGATTACTTGAAAGCCTAG
Upstream 100 bases:
>100_bases CCATCGAAGTAAAGGTGAACTTCGCGGTGCAATTTATTGCAATGAATGAAATAATACCCAACAGAACGCCTTGGGCGATG TTTTGAGTGGAGTAAGTACT
Downstream 100 bases:
>100_bases CTTAGATTTCACCCTAAACTCAGCAATAGGGTTGATTAAATATACATTTAGTTTAAAAAATGTGCGCTTGAAGTGTTTTT CGTCATTATTCGCTAAAAAG
Product: D,D-heptose 1,7-bisphosphate phosphatase
Products: NA
Alternate protein names: D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [H]
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MVAVNRAVFLDRDGVINKDHGYVHQVDDFEYIEGVFEACLALKKMGYKLVVVTNQSGIARGMYSEDQFHSLTEWMDWNFA DKGVDLDGIYYCPHHAEKGMGEYKVDCDCRKPKPGMLNDAAKFLKVDLSQSVMVGDKADDMQAAKAAGVPTRILVRSGKV IADSSDATIVLDSIADVPDYLKA
Sequences:
>Translated_183_residues MVAVNRAVFLDRDGVINKDHGYVHQVDDFEYIEGVFEACLALKKMGYKLVVVTNQSGIARGMYSEDQFHSLTEWMDWNFA DKGVDLDGIYYCPHHAEKGMGEYKVDCDCRKPKPGMLNDAAKFLKVDLSQSVMVGDKADDMQAAKAAGVPTRILVRSGKV IADSSDATIVLDSIADVPDYLKA >Mature_183_residues MVAVNRAVFLDRDGVINKDHGYVHQVDDFEYIEGVFEACLALKKMGYKLVVVTNQSGIARGMYSEDQFHSLTEWMDWNFA DKGVDLDGIYYCPHHAEKGMGEYKVDCDCRKPKPGMLNDAAKFLKVDLSQSVMVGDKADDMQAAKAAGVPTRILVRSGKV IADSSDATIVLDSIADVPDYLKA
Specific function: Converts the D-glycero-beta-D-manno-heptose 1,7- bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1- phosphate by removing the phosphate group at the C-7 position [H]
COG id: COG0241
COG function: function code E; Histidinol phosphatase and related phosphatases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gmhB family [H]
Homologues:
Organism=Escherichia coli, GI1786399, Length=178, Percent_Identity=60.1123595505618, Blast_Score=230, Evalue=4e-62, Organism=Escherichia coli, GI87082027, Length=148, Percent_Identity=32.4324324324324, Blast_Score=84, Evalue=6e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR004446 - InterPro: IPR006543 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: 3.1.1.-
Molecular weight: Translated: 20231; Mature: 20231
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAVNRAVFLDRDGVINKDHGYVHQVDDFEYIEGVFEACLALKKMGYKLVVVTNQSGIAR CEEECCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC GMYSEDQFHSLTEWMDWNFADKGVDLDGIYYCPHHAEKGMGEYKVDCDCRKPKPGMLNDA CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHCCCCCEEECCCCCCCCCCCHHHH AKFLKVDLSQSVMVGDKADDMQAAKAAGVPTRILVRSGKVIADSSDATIVLDSIADVPDY HHHHHHCCCCCEEECCCCCHHHHHHHCCCCEEEEEECCCEEECCCCCEEEECCHHCCHHH LKA HCC >Mature Secondary Structure MVAVNRAVFLDRDGVINKDHGYVHQVDDFEYIEGVFEACLALKKMGYKLVVVTNQSGIAR CEEECCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC GMYSEDQFHSLTEWMDWNFADKGVDLDGIYYCPHHAEKGMGEYKVDCDCRKPKPGMLNDA CCCCCHHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHCCCCCEEECCCCCCCCCCCHHHH AKFLKVDLSQSVMVGDKADDMQAAKAAGVPTRILVRSGKVIADSSDATIVLDSIADVPDY HHHHHHCCCCCEEECCCCCHHHHHHHCCCCEEEEEECCCEEECCCCCEEEECCHHCCHHH LKA HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301; 12101286 [H]