Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

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The map label for this gene is 120598469

Identifier: 120598469

GI number: 120598469

Start: 1893680

End: 1895527

Strand: Direct

Name: 120598469

Synonym: Sputw3181_1652

Alternate gene names: NA

Gene position: 1893680-1895527 (Clockwise)

Preceding gene: 120598468

Following gene: 120598470

Centisome position: 40.22

GC content: 43.34

Gene sequence:

>1848_bases
ATGAATGCGAGTGAATTACAACCCGTAGTGCAATTTCTCAAGGGGTTAGTTCCCTTTGATACCTTACCTGATGAGGTGGT
TTTACGTTGTGCTAAGGCAATCACCATAGGTTATTACAGTAAGGCTTCGGGCTATGTTAGCTTCGATGCCAATGCACCGA
AACTATATATAGTACGCAGTGGTGCTTTTGAGGTGAGAGATCCTGAAGGCGTGTTAGTTGATAGAGTGGGTGAAGGTGAA
TTTTTTGGTTTTTCTACACTGCTATCGGGGGAGAAGGTTGTTAACAAAGTGGCAATACTGGAGGATGGTCTGGTTTATCA
TCTACCGCAACCTTTGTTTGATCAATTAAGGAGTGAGAGCCGACATTTCGATAAGTTTTTCACCCGAGCTTTTGCAAAGC
GTCTTCGGCATGAGGCGCGTTTTAAAGCAAAAGATCTCACGACAACAAGTCGTATCAGTACGTTAATGTCTTCCGATCCT
ATTATGATTGATGCCCATGCCAGTGTTACCCAAGCTGCACTCCTGATGCGAAATGCGCGCGTATCTTCTTTGTTGGTGAC
GGATAATCATAAATTAGTGGGTATTTTAACGGATAAGGATTTACGTAATCGAGTATTGGCAGTAGGCCTCGATGGTCGCC
TAGCTGTACATCAAGCAATGACGGTTTCACCGATTTCTATTTCGTCGAATGCATTAATTTTTGAAGCTATGCTATTGATG
AGTGAGCATAATATTCATCATTTACCTATTATTGATGAAGGTAAGGCTATTGGCATGGTAACCAGTACCGATATCTTGCG
TGGACAAGGTTCTCAGCCGCTGTTGCTTATTGGGGAAATTGAGCGTCAGCAGGATCTGGCGAGCTTAATCTCTGTCAGTA
AGCAAATTCCACTATTGCTGCAGAATTTAATCAGTGCCGATGCTAGGGCTGAAGAAATTGGACGTGTATTGACTTCGGTT
ACCGATGCACTGACGCGGCGGTTAATCGTGCTTAATCAGCAGCTTCTTGGTGATCCACCGATGGCCTTTTGTTGGTTAGC
GTTCGGCTCTCAAGGTCGACAGGATCAAGCTGCATGTTCGGATCAAGATAATGGTCTACTGGTTGCAGAAGAAATGGATG
ACTATGCGAAGGGATATTTTGATGCGCTTACCCATGCGGTATGTTCTGGGTTAGATCAGTGTGGCTATGTTTTTTGTCCA
GGTAATATCATGGCACAAAATCCACAATGGCGAATGTCACTAAAACAATGGCAGCACCTATTTGAAAAGTGGGTGATAAC
CCCAGAACCTAAAGCGCTAATGCATGCCAGTATTTTTTTTGATATGCGCTCGGTTTATGGGCCACAGACCTTATTTGATG
CATTGCAGGATAAAGTATTAGCGCAAACCCGTGATAACGATATCTTTCTTGCGGGAATGACGGGGAATTCGTTGATTGAA
TCTCCCCCCTTAGGTTTTTTCCGCACATTTGTGCTCGAGCGTGATGGTAGTGAAGTAAAAGGTATTGATTTAAAACATAA
AGGTAATGCATTAATTAATGATATCGCCCGTGTCTATGCGCTGTCAGCAGGCATAAAAGAAGTCAATACAGCCAAACGTA
TTCGCGCTTTGATGGATGCCAATATCCTCAATCGTAAGGATGCACTCAATTTGGCCGATGCCCACGAGTTTATCGCCCAT
ATGCGCTTAGCTAATCAAGGTTACCAATATACTCAGGGGCAAAAAGTGAGTAACTACTTGTTACCTGGTCATTTATCATC
ATTAGTTCGCCATCAATTACGGGACGCCTTTAAGGTGGTACATGATGCTCAATCTGGCATGAAAATGAAATTTATGCGGA
GCTTTTAG

Upstream 100 bases:

>100_bases
CTTTTGCTTTTTAGCCTTGGCCTGACTTTAGTCGAATGTAGCTCACCTGCAATGCGGGCTATAGTGGTGAGAATATCAGA
TTAAAAATAAGGTGTTGCCT

Downstream 100 bases:

>100_bases
GTGAGTATTCTGTTGATGAAGATGCGATTAAATTGGCGGGCTCTGCGCTGTCAGCATCAACTGTTCAAAGATTATTATCA
ATCACTTGTGCCTTTACTCT

Product: cyclic nucleotide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRSGAFEVRDPEGVLVDRVGEGE
FFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDP
IMIDAHASVTQAALLMRNARVSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM
SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLLQNLISADARAEEIGRVLTSV
TDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCP
GNIMAQNPQWRMSLKQWQHLFEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE
SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAHEFIAH
MRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF

Sequences:

>Translated_615_residues
MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRSGAFEVRDPEGVLVDRVGEGE
FFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDP
IMIDAHASVTQAALLMRNARVSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM
SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLLQNLISADARAEEIGRVLTSV
TDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCP
GNIMAQNPQWRMSLKQWQHLFEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE
SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAHEFIAH
MRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF
>Mature_615_residues
MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRSGAFEVRDPEGVLVDRVGEGE
FFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDP
IMIDAHASVTQAALLMRNARVSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM
SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLLQNLISADARAEEIGRVLTSV
TDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCP
GNIMAQNPQWRMSLKQWQHLFEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE
SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAHEFIAH
MRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF

Specific function: Unknown

COG id: COG2905

COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644 [H]

Pfam domain/function: PF00571 CBS [H]

EC number: NA

Molecular weight: Translated: 68377; Mature: 68377

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS50042 CNMP_BINDING_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRS
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEECCCCCEEEEEEC
GAFEVRDPEGVLVDRVGEGEFFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSES
CCEEEECCCCCEEEECCCCCEECHHHHHCCHHHHHHHHHHCCCCCEECCCHHHHHHHHHH
RHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDPIMIDAHASVTQAALLMRNAR
HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
VSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM
CEEEEEECCCEEEEEEECCHHHCCEEEEECCCCEEHHHHEEECCEECCCCHHHHHHHHHH
SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLL
HCCCCEECCEECCCCEEEEEECCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
QNLISADARAEEIGRVLTSVTDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHCCC
DQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCPGNIMAQNPQWRMSLKQWQHL
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCHHHHHHHHHHHH
FEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE
HHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDA
CCCCHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
NILNRKDALNLADAHEFIAHMRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVV
HHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHH
HDAQSGMKMKFMRSF
HHHHCCCCHHHHHCC
>Mature Secondary Structure
MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRS
CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEECCCCCEEEEEEC
GAFEVRDPEGVLVDRVGEGEFFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSES
CCEEEECCCCCEEEECCCCCEECHHHHHCCHHHHHHHHHHCCCCCEECCCHHHHHHHHHH
RHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDPIMIDAHASVTQAALLMRNAR
HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
VSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM
CEEEEEECCCEEEEEEECCHHHCCEEEEECCCCEEHHHHEEECCEECCCCHHHHHHHHHH
SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLL
HCCCCEECCEECCCCEEEEEECCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
QNLISADARAEEIGRVLTSVTDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACS
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHCCC
DQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCPGNIMAQNPQWRMSLKQWQHL
CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCHHHHHHHHHHHH
FEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE
HHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDA
CCCCHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
NILNRKDALNLADAHEFIAHMRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVV
HHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHH
HDAQSGMKMKFMRSF
HHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]