| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120598469
Identifier: 120598469
GI number: 120598469
Start: 1893680
End: 1895527
Strand: Direct
Name: 120598469
Synonym: Sputw3181_1652
Alternate gene names: NA
Gene position: 1893680-1895527 (Clockwise)
Preceding gene: 120598468
Following gene: 120598470
Centisome position: 40.22
GC content: 43.34
Gene sequence:
>1848_bases ATGAATGCGAGTGAATTACAACCCGTAGTGCAATTTCTCAAGGGGTTAGTTCCCTTTGATACCTTACCTGATGAGGTGGT TTTACGTTGTGCTAAGGCAATCACCATAGGTTATTACAGTAAGGCTTCGGGCTATGTTAGCTTCGATGCCAATGCACCGA AACTATATATAGTACGCAGTGGTGCTTTTGAGGTGAGAGATCCTGAAGGCGTGTTAGTTGATAGAGTGGGTGAAGGTGAA TTTTTTGGTTTTTCTACACTGCTATCGGGGGAGAAGGTTGTTAACAAAGTGGCAATACTGGAGGATGGTCTGGTTTATCA TCTACCGCAACCTTTGTTTGATCAATTAAGGAGTGAGAGCCGACATTTCGATAAGTTTTTCACCCGAGCTTTTGCAAAGC GTCTTCGGCATGAGGCGCGTTTTAAAGCAAAAGATCTCACGACAACAAGTCGTATCAGTACGTTAATGTCTTCCGATCCT ATTATGATTGATGCCCATGCCAGTGTTACCCAAGCTGCACTCCTGATGCGAAATGCGCGCGTATCTTCTTTGTTGGTGAC GGATAATCATAAATTAGTGGGTATTTTAACGGATAAGGATTTACGTAATCGAGTATTGGCAGTAGGCCTCGATGGTCGCC TAGCTGTACATCAAGCAATGACGGTTTCACCGATTTCTATTTCGTCGAATGCATTAATTTTTGAAGCTATGCTATTGATG AGTGAGCATAATATTCATCATTTACCTATTATTGATGAAGGTAAGGCTATTGGCATGGTAACCAGTACCGATATCTTGCG TGGACAAGGTTCTCAGCCGCTGTTGCTTATTGGGGAAATTGAGCGTCAGCAGGATCTGGCGAGCTTAATCTCTGTCAGTA AGCAAATTCCACTATTGCTGCAGAATTTAATCAGTGCCGATGCTAGGGCTGAAGAAATTGGACGTGTATTGACTTCGGTT ACCGATGCACTGACGCGGCGGTTAATCGTGCTTAATCAGCAGCTTCTTGGTGATCCACCGATGGCCTTTTGTTGGTTAGC GTTCGGCTCTCAAGGTCGACAGGATCAAGCTGCATGTTCGGATCAAGATAATGGTCTACTGGTTGCAGAAGAAATGGATG ACTATGCGAAGGGATATTTTGATGCGCTTACCCATGCGGTATGTTCTGGGTTAGATCAGTGTGGCTATGTTTTTTGTCCA GGTAATATCATGGCACAAAATCCACAATGGCGAATGTCACTAAAACAATGGCAGCACCTATTTGAAAAGTGGGTGATAAC CCCAGAACCTAAAGCGCTAATGCATGCCAGTATTTTTTTTGATATGCGCTCGGTTTATGGGCCACAGACCTTATTTGATG CATTGCAGGATAAAGTATTAGCGCAAACCCGTGATAACGATATCTTTCTTGCGGGAATGACGGGGAATTCGTTGATTGAA TCTCCCCCCTTAGGTTTTTTCCGCACATTTGTGCTCGAGCGTGATGGTAGTGAAGTAAAAGGTATTGATTTAAAACATAA AGGTAATGCATTAATTAATGATATCGCCCGTGTCTATGCGCTGTCAGCAGGCATAAAAGAAGTCAATACAGCCAAACGTA TTCGCGCTTTGATGGATGCCAATATCCTCAATCGTAAGGATGCACTCAATTTGGCCGATGCCCACGAGTTTATCGCCCAT ATGCGCTTAGCTAATCAAGGTTACCAATATACTCAGGGGCAAAAAGTGAGTAACTACTTGTTACCTGGTCATTTATCATC ATTAGTTCGCCATCAATTACGGGACGCCTTTAAGGTGGTACATGATGCTCAATCTGGCATGAAAATGAAATTTATGCGGA GCTTTTAG
Upstream 100 bases:
>100_bases CTTTTGCTTTTTAGCCTTGGCCTGACTTTAGTCGAATGTAGCTCACCTGCAATGCGGGCTATAGTGGTGAGAATATCAGA TTAAAAATAAGGTGTTGCCT
Downstream 100 bases:
>100_bases GTGAGTATTCTGTTGATGAAGATGCGATTAAATTGGCGGGCTCTGCGCTGTCAGCATCAACTGTTCAAAGATTATTATCA ATCACTTGTGCCTTTACTCT
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRSGAFEVRDPEGVLVDRVGEGE FFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDP IMIDAHASVTQAALLMRNARVSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLLQNLISADARAEEIGRVLTSV TDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCP GNIMAQNPQWRMSLKQWQHLFEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAHEFIAH MRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF
Sequences:
>Translated_615_residues MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRSGAFEVRDPEGVLVDRVGEGE FFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDP IMIDAHASVTQAALLMRNARVSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLLQNLISADARAEEIGRVLTSV TDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCP GNIMAQNPQWRMSLKQWQHLFEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAHEFIAH MRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF >Mature_615_residues MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRSGAFEVRDPEGVLVDRVGEGE FFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSESRHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDP IMIDAHASVTQAALLMRNARVSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLLQNLISADARAEEIGRVLTSV TDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACSDQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCP GNIMAQNPQWRMSLKQWQHLFEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDANILNRKDALNLADAHEFIAH MRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVVHDAQSGMKMKFMRSF
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 [H]
Pfam domain/function: PF00571 CBS [H]
EC number: NA
Molecular weight: Translated: 68377; Mature: 68377
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRS CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEECCCCCEEEEEEC GAFEVRDPEGVLVDRVGEGEFFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSES CCEEEECCCCCEEEECCCCCEECHHHHHCCHHHHHHHHHHCCCCCEECCCHHHHHHHHHH RHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDPIMIDAHASVTQAALLMRNAR HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC VSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM CEEEEEECCCEEEEEEECCHHHCCEEEEECCCCEEHHHHEEECCEECCCCHHHHHHHHHH SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLL HCCCCEECCEECCCCEEEEEECCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH QNLISADARAEEIGRVLTSVTDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHCCC DQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCPGNIMAQNPQWRMSLKQWQHL CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCHHHHHHHHHHHH FEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE HHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDA CCCCHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH NILNRKDALNLADAHEFIAHMRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVV HHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHH HDAQSGMKMKFMRSF HHHHCCCCHHHHHCC >Mature Secondary Structure MNASELQPVVQFLKGLVPFDTLPDEVVLRCAKAITIGYYSKASGYVSFDANAPKLYIVRS CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEEEEECCCCEEEECCCCCEEEEEEC GAFEVRDPEGVLVDRVGEGEFFGFSTLLSGEKVVNKVAILEDGLVYHLPQPLFDQLRSES CCEEEECCCCCEEEECCCCCEECHHHHHCCHHHHHHHHHHCCCCCEECCCHHHHHHHHHH RHFDKFFTRAFAKRLRHEARFKAKDLTTTSRISTLMSSDPIMIDAHASVTQAALLMRNAR HHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC VSSLLVTDNHKLVGILTDKDLRNRVLAVGLDGRLAVHQAMTVSPISISSNALIFEAMLLM CEEEEEECCCEEEEEEECCHHHCCEEEEECCCCEEHHHHEEECCEECCCCHHHHHHHHHH SEHNIHHLPIIDEGKAIGMVTSTDILRGQGSQPLLLIGEIERQQDLASLISVSKQIPLLL HCCCCEECCEECCCCEEEEEECCHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH QNLISADARAEEIGRVLTSVTDALTRRLIVLNQQLLGDPPMAFCWLAFGSQGRQDQAACS HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHCCC DQDNGLLVAEEMDDYAKGYFDALTHAVCSGLDQCGYVFCPGNIMAQNPQWRMSLKQWQHL CCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEECCCHHHHHHHHHHHH FEKWVITPEPKALMHASIFFDMRSVYGPQTLFDALQDKVLAQTRDNDIFLAGMTGNSLIE HHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC SPPLGFFRTFVLERDGSEVKGIDLKHKGNALINDIARVYALSAGIKEVNTAKRIRALMDA CCCCHHHHHHHEECCCCCCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH NILNRKDALNLADAHEFIAHMRLANQGYQYTQGQKVSNYLLPGHLSSLVRHQLRDAFKVV HHCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHH HDAQSGMKMKFMRSF HHHHCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]