Click here to switch to the map view.

The map label for this gene is 120598296

Identifier: 120598296

GI number: 120598296

Start: 1664547

End: 1664855

Strand: Direct

Name: 120598296

Synonym: Sputw3181_1474

Alternate gene names: NA

Gene position: 1664547-1664855 (Clockwise)

Preceding gene: 120598295

Following gene: 120598297

Centisome position: 35.35

GC content: 39.16

Gene sequence:

>309_bases
ATGCAACCCTATGTTTATATTATGGCCAGTCAATTCAATGGTACTTTATATATTGGTGTAACCAGCCAGTTAGAGCAGCG
AGTATGGCAGCATAAAAACGCCATTATTGATGGATTTACCCATAAATACAAAGTTGATCAGCTAGTTTATTTTGAGGCTC
ATGTATCCATGTACGATGCTATTTGTCGTGAGAAACAGCTAAAAAAATGGCGCCGTGAATGGAAAATTGATCTGATTAAT
TCACAAAACCCAAAGTGGCAAGATTTATGGTACACGGTAATAGCTGGATCCCCGCATACGCGAGGATGA

Upstream 100 bases:

>100_bases
TTCTTGCTCCTTTTGTCATCCTCGCGAACGCGGGGATCCAGCTTTTGAGTTATTATCTAAATCACTTATAAAATGGATTG
CTACTACTCAAGGATGAACT

Downstream 100 bases:

>100_bases
CGGGGTGGGGACGTTATATACCGTCGTCCAGCTAAATGGATCCCCGCGTGTGCGAGGATGACGGCAGAAGCGAGAATTAC
GCCCTCTCTGTCATTCCCGC

Product: excinuclease ABC subunit C

Products: NA

Alternate protein names: Excinuclease ABC C Subunit Domain Protein; Endonuclease; Endo/Excinuclease Amino Terminal Domain-Containing Protein; Excinuclease ABC Subunit C Domain-Containing Protein; Excinuclease ABC C Subunit; Excinuclease ABC C Subunit Domain-Containing Protein; Excinuclease ABC C Subunit-Like Protein; Endonuclease Containing A URI Domain; Endo/Excinuclease Amino Terminal Domain Protein; GIY-YIG Catalytic Domain-Containing Protein; Endonuclease Protein; Crossover Junction Endodeoxyribonuclease RuvC; Excinuclease ABC; Endo/Excinuclease; GIY-YIG Endonuclease Domain-Containing Protein; Excinuclease ABCsubunit C Domain-Containing Protein; Excinuclease ABC C Subunit N-Terminal; GIY-YIG Catalytic Domain Protein

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MQPYVYIMASQFNGTLYIGVTSQLEQRVWQHKNAIIDGFTHKYKVDQLVYFEAHVSMYDAICREKQLKKWRREWKIDLIN
SQNPKWQDLWYTVIAGSPHTRG

Sequences:

>Translated_102_residues
MQPYVYIMASQFNGTLYIGVTSQLEQRVWQHKNAIIDGFTHKYKVDQLVYFEAHVSMYDAICREKQLKKWRREWKIDLIN
SQNPKWQDLWYTVIAGSPHTRG
>Mature_102_residues
MQPYVYIMASQFNGTLYIGVTSQLEQRVWQHKNAIIDGFTHKYKVDQLVYFEAHVSMYDAICREKQLKKWRREWKIDLIN
SQNPKWQDLWYTVIAGSPHTRG

Specific function: Unknown

COG id: COG2827

COG function: function code L; Predicted endonuclease containing a URI domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12237; Mature: 12237

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPYVYIMASQFNGTLYIGVTSQLEQRVWQHKNAIIDGFTHKYKVDQLVYFEAHVSMYDA
CCCEEEEEEECCCCEEEEEEHHHHHHHHHHHCCCEECCCCCEEECCEEEEEHHHHHHHHH
ICREKQLKKWRREWKIDLINSQNPKWQDLWYTVIAGSPHTRG
HHHHHHHHHHHHHCEEEEECCCCCCHHHEEEEEEECCCCCCC
>Mature Secondary Structure
MQPYVYIMASQFNGTLYIGVTSQLEQRVWQHKNAIIDGFTHKYKVDQLVYFEAHVSMYDA
CCCEEEEEEECCCCEEEEEEHHHHHHHHHHHCCCEECCCCCEEECCEEEEEHHHHHHHHH
ICREKQLKKWRREWKIDLINSQNPKWQDLWYTVIAGSPHTRG
HHHHHHHHHHHHHCEEEEECCCCCCHHHEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA